Sequence Similarity Clusters for the Entities in PDB 1D5D

Entity #1 | Chains: A
S PEPTIDE protein, length: 15 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: B
RNASE S protein, length: 101 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 19 29 1315
95 % 19 29 1759 Flexibility: Low
Max RMSD: 1.6, Avg RMSD: 0.6
PDBFlex
90 % 19 29 1795
70 % 19 29 1821
50 % 19 29 1850
40 % 19 29 1848
30 % 19 29 1783

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.