Sequence Similarity Clusters for the Entities in PDB 1D5B

Entity #1 | Chains: A,L
chimeric OXY-COPE catalytic ANTIBODY AZ-28 (light chain) protein, length: 211 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 41143
95 % 4 4 12470 Flexibility: Low
Max RMSD: 3.3, Avg RMSD: 1.6
PDBFlex
90 % 4 4 12264
70 % 1692 2327 1
50 % 3433 4713 1
40 % 3433 4713 1
30 % 4063 5567 1
Entity #2 | Chains: B,H
chimeric OXY-COPE catalytic ANTIBODY AZ-28 (HEAVY chain) protein, length: 221 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 40133
95 % 4 4 12385 Flexibility: Low
Max RMSD: 5.1, Avg RMSD: 2.9
PDBFlex
90 % 8 9 5793
70 % 1656 2280 2
50 % 3434 4713 1
40 % 3434 4713 1
30 % 4064 5567 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.