Sequence Similarity Clusters for the Entities in PDB 1D5B

Entity #1 | Chains: A,L
chimeric OXY-COPE catalytic ANTIBODY AZ-28 (light chain) protein, length: 211 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 24055
95 % 4 4 13938 Flexibility: Low
Max RMSD: 3.4, Avg RMSD: 1.9
PDBFlex
90 % 4 4 13694
70 % 1848 2553 1
50 % 3758 5180 1
40 % 4254 5834 1
30 % 5307 7269 1
Entity #2 | Chains: B,H
chimeric OXY-COPE catalytic ANTIBODY AZ-28 (HEAVY chain) protein, length: 221 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 34651
95 % 4 4 12282 Flexibility: Low
Max RMSD: 5.1, Avg RMSD: 2.9
PDBFlex
90 % 8 9 6266
70 % 1815 2511 2
50 % 3759 5180 1
40 % 4255 5834 1
30 % 5308 7269 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures