Sequence Similarity Clusters for the Entities in PDB 1D5B

Entity #1 | Chains: A,L
chimeric OXY-COPE catalytic ANTIBODY AZ-28 (light chain) protein, length: 211 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 41770
95 % 4 4 12639 Flexibility: Low
Max RMSD: 3.3, Avg RMSD: 1.6
PDBFlex
90 % 4 4 12435
70 % 1746 2392 1
50 % 3541 4843 1
40 % 3541 4843 1
30 % 4178 5705 1
Entity #2 | Chains: B,H
chimeric OXY-COPE catalytic ANTIBODY AZ-28 (HEAVY chain) protein, length: 221 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 40739
95 % 4 4 12551 Flexibility: Low
Max RMSD: 5.1, Avg RMSD: 2.9
PDBFlex
90 % 8 9 5874
70 % 1707 2342 2
50 % 3542 4843 1
40 % 3542 4843 1
30 % 4179 5705 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures