Sequence Similarity Clusters for the Entities in PDB 1D5B

Entity #1 | Chains: A,L
chimeric OXY-COPE catalytic ANTIBODY AZ-28 (light chain) protein, length: 211 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 39952
95 % 4 4 12073 Flexibility: Low
Max RMSD: 3.4, Avg RMSD: 1.9
PDBFlex
90 % 4 4 11876
70 % 1373 1841 2
50 % 3336 4537 1
40 % 3336 4537 1
30 % 3925 5342 1
Entity #2 | Chains: B,H
chimeric OXY-COPE catalytic ANTIBODY AZ-28 (HEAVY chain) protein, length: 221 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 38959
95 % 4 4 11990 Flexibility: Low
Max RMSD: 5.1, Avg RMSD: 2.9
PDBFlex
90 % 7 8 6146
70 % 1612 2197 1
50 % 3337 4537 1
40 % 3337 4537 1
30 % 3926 5342 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.