Sequence Similarity Clusters for the Entities in PDB 1D4W

Entity #1 | Chains: A,B
T CELL SIGNAL TRANSDUCTION MOLECULE SAP protein, length: 104 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 4 8603
95 % 3 4 8633 Flexibility: Low
Max RMSD: 1.2, Avg RMSD: 0.9
PDBFlex
90 % 3 4 8563
70 % 3 4 8254
50 % 3 4 7569
40 % 30 159 216
30 % 41 239 159
Entity #2 | Chains: C,D
SIGNALING LYMPHOCYTIC ACTIVATION MOLECULE protein, length: 11 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures