Sequence Similarity Clusters for the Entities in PDB 1D4V

Entity #1 | Chains: B
TNF-RELATED APOPTOSIS INDUCING LIGAND protein, length: 163 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 6 3009
95 % 2 6 3722 Flexibility: Low
Max RMSD: 3.8, Avg RMSD: 1.4
PDBFlex
90 % 2 6 3783
70 % 2 6 3730
50 % 2 6 3621
40 % 2 6 3488
30 % 3 15 1740
Entity #2 | Chains: A
DEATH RECEPTOR 5 protein, length: 117 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 8 2677
95 % 4 9 3078 Flexibility: Low
Max RMSD: 3.0, Avg RMSD: 1.2
PDBFlex
90 % 4 9 3124
70 % 4 9 3088
50 % 4 10 2692
40 % 4 10 2636
30 % 4 10 2491

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures