Sequence Similarity Clusters for the Entities in PDB 1D4V

Entity #1 | Chains: B
TNF-RELATED APOPTOSIS INDUCING LIGAND protein, length: 163 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 6 3392
95 % 2 6 3705 Flexibility: Low
Max RMSD: 3.8, Avg RMSD: 1.3
PDBFlex
90 % 2 6 3778
70 % 2 6 3701
50 % 2 6 3620
40 % 2 6 3454
30 % 17 61 264
Entity #2 | Chains: A
DEATH RECEPTOR 5 protein, length: 117 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 8 3062
95 % 4 9 3143 Flexibility: Low
Max RMSD: 3.0, Avg RMSD: 1.2
PDBFlex
90 % 4 9 3195
70 % 4 9 3132
50 % 4 10 2682
40 % 4 10 2618
30 % 4 10 2439

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures