Sequence Similarity Clusters for the Entities in PDB 1D4V

Entity #1 | Chains: B
TNF-RELATED APOPTOSIS INDUCING LIGAND protein, length: 163 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 6 2944
95 % 2 6 3644 Flexibility: Low
Max RMSD: 3.8, Avg RMSD: 1.4
PDBFlex
90 % 2 6 3693
70 % 2 6 3638
50 % 2 6 3537
40 % 2 6 3410
30 % 3 15 1704
Entity #2 | Chains: A
DEATH RECEPTOR 5 protein, length: 117 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 8 2618
95 % 4 9 3006 Flexibility: Low
Max RMSD: 3.0, Avg RMSD: 1.2
PDBFlex
90 % 4 9 3050
70 % 4 9 3026
50 % 4 10 2634
40 % 4 10 2581
30 % 4 10 2439

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures