Sequence Similarity Clusters for the Entities in PDB 1D4S

Entity #1 | Chains: A,B
PROTEIN (HIV-1 PROTEASE) protein, length: 99 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 47774
95 % 551 587 2 Flexibility: Low
Max RMSD: 4.4, Avg RMSD: 0.6
PDBFlex
90 % 599 649 2
70 % 625 676 5
50 % 645 702 5
40 % 655 712 9
30 % 657 714 14

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures