Sequence Similarity Clusters for the Entities in PDB 1D4S

Entity #1 | Chains: A,B
PROTEIN (HIV-1 PROTEASE) protein, length: 99 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 323 352 5
95 % 377 411 4 Flexibility: Low
Max RMSD: 4.4, Avg RMSD: 0.6
PDBFlex
90 % 607 659 3
70 % 631 683 5
50 % 651 709 5
40 % 661 719 8
30 % 663 721 12

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures