Sequence Similarity Clusters for the Entities in PDB 1D3U

Entity #1 | Chains: C
DNA 24-MER: BRE+TATA-BOX dna, length: 24 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: D
DNA 23-MER: BRE+TATA-BOX dna, length: 23 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: A
TATA-BINDING PROTEIN protein, length: 181 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 3 21491
95 % 3 3 18619
90 % 3 3 18137
70 % 3 3 16758
50 % 3 3 14571
40 % 26 41 825
30 % 27 42 771
Entity #4 | Chains: B
TRANSCRIPTION INITIATION FACTOR IIB protein, length: 201 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 41077
95 % 2 2 31199
90 % 2 2 29853
70 % 2 2 26722
50 % 2 2 22812
40 % 2 2 20072
30 % 2 2 17000

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.