Sequence Similarity Clusters for the Entities in PDB 1D3U

Entity #1 | Chains: C
DNA 24-MER: BRE+TATA-BOX dna, length: 24 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: D
DNA 23-MER: BRE+TATA-BOX dna, length: 23 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: A
TATA-BINDING PROTEIN protein, length: 181 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 23091
95 % 3 3 20619 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 1.1
PDBFlex
90 % 3 3 20017
70 % 3 3 18367
50 % 3 3 15942
40 % 27 42 851
30 % 28 43 809
Entity #4 | Chains: B
TRANSCRIPTION INITIATION FACTOR IIB protein, length: 201 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 31699
95 % 2 2 27479 Flexibility: Low
Max RMSD: 1.8, Avg RMSD: 1.8
PDBFlex
90 % 2 2 26443
70 % 2 2 23901
50 % 2 2 20494
40 % 2 2 18083
30 % 2 2 15157

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures