Sequence Similarity Clusters for the Entities in PDB 1D3U

Entity #1 | Chains: C
DNA 24-MER: BRE+TATA-BOX dna, length: 24 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: D
DNA 23-MER: BRE+TATA-BOX dna, length: 23 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: A
TATA-BINDING PROTEIN protein, length: 181 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 22706
95 % 3 3 19570 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 1.1
PDBFlex
90 % 3 3 19046
70 % 3 3 17583
50 % 3 3 15249
40 % 26 41 865
30 % 27 42 812
Entity #4 | Chains: B
TRANSCRIPTION INITIATION FACTOR IIB protein, length: 201 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 43135
95 % 2 2 32696 Flexibility: Low
Max RMSD: 1.8, Avg RMSD: 1.8
PDBFlex
90 % 2 2 31240
70 % 2 2 27873
50 % 2 2 23744
40 % 2 2 20893
30 % 2 2 17694

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures