Sequence Similarity Clusters for the Entities in PDB 1D3U

Entity #1 | Chains: C
DNA 24-MER: BRE+TATA-BOX dna, length: 24 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: D
DNA 23-MER: BRE+TATA-BOX dna, length: 23 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: A
TATA-BINDING PROTEIN protein, length: 181 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 3 20431
95 % 3 3 17697
90 % 3 3 17254
70 % 3 3 15987
50 % 3 3 13946
40 % 24 36 905
30 % 27 41 742
Entity #4 | Chains: B
TRANSCRIPTION INITIATION FACTOR IIB protein, length: 201 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 39224
95 % 2 2 29796
90 % 2 2 28547
70 % 2 2 25632
50 % 2 2 21948
40 % 2 2 19315
30 % 2 2 16366

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.