Sequence Similarity Clusters for the Entities in PDB 1D3U

Entity #1 | Chains: C
DNA 24-MER: BRE+TATA-BOX dna, length: 24 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: D
DNA 23-MER: BRE+TATA-BOX dna, length: 23 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: A
TATA-BINDING PROTEIN protein, length: 181 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 22151
95 % 3 3 19139 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 1.1
PDBFlex
90 % 3 3 18642
70 % 3 3 17232
50 % 3 3 14960
40 % 26 41 847
30 % 27 42 788
Entity #4 | Chains: B
TRANSCRIPTION INITIATION FACTOR IIB protein, length: 201 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 42256
95 % 2 2 32075 Flexibility: Low
Max RMSD: 1.8, Avg RMSD: 1.8
PDBFlex
90 % 2 2 30669
70 % 2 2 27381
50 % 2 2 23361
40 % 2 2 20557
30 % 2 2 17418

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures