Sequence Similarity Clusters for the Entities in PDB 1D3T

Entity #1 | Chains: A
ALPHA-THROMBIN protein, length: 36 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 312 334 52
95 % 318 342 63 Flexibility: Low
Max RMSD: 5.3, Avg RMSD: 0.7
PDBFlex
90 % 318 342 67
70 % 318 342 80
50 % 318 342 111
40 % 318 342 135
30 % 318 342 145
Entity #2 | Chains: B
ALPHA-THROMBIN protein, length: 259 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 311 332 53
95 % 352 378 52 Flexibility: Low
Max RMSD: 3.5, Avg RMSD: 0.6
PDBFlex
90 % 357 385 56
70 % 374 409 47
50 % 374 409 85
40 % 1733 1884 4
30 % 1742 1898 7
Entity #3 | Chains: H
HIRUGEN protein, length: 12 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures