Sequence Similarity Clusters for the Entities in PDB 1D3T

Entity #1 | Chains: A
ALPHA-THROMBIN protein, length: 36 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 315 338 45
95 % 316 339 64 Flexibility: Low
Max RMSD: 5.3, Avg RMSD: 0.7
PDBFlex
90 % 316 339 67
70 % 317 341 78
50 % 317 341 109
40 % 317 341 132
30 % 317 341 140
Entity #2 | Chains: B
ALPHA-THROMBIN protein, length: 259 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 271 290 75
95 % 351 377 52 Flexibility: Low
Max RMSD: 3.1, Avg RMSD: 0.6
PDBFlex
90 % 356 384 48
70 % 373 408 46
50 % 373 408 84
40 % 1716 1863 4
30 % 1729 1885 6
Entity #3 | Chains: H
HIRUGEN protein, length: 12 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures