Sequence Similarity Clusters for the Entities in PDB 1D3Q

Entity #1 | Chains: A
ALPHA-THROMBIN protein, length: 36 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 297 328 43
95 % 298 329 58
90 % 298 329 63
70 % 299 331 72
50 % 299 331 96
40 % 299 331 120
30 % 299 331 133
Entity #2 | Chains: B
ALPHA-THROMBIN protein, length: 259 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 257 283 52
95 % 332 367 34
90 % 337 374 36
70 % 354 398 40
50 % 354 398 74
40 % 1450 1606 4
30 % 1569 1748 6
Entity #3 | Chains: H
HIRUGEN protein, length: 12 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.