Sequence Similarity Clusters for the Entities in PDB 1D3Q

Entity #1 | Chains: A
ALPHA-THROMBIN protein, length: 36 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 304 335 45
95 % 305 336 61
90 % 305 336 66
70 % 306 338 78
50 % 306 338 107
40 % 306 338 131
30 % 306 338 136
Entity #2 | Chains: B
ALPHA-THROMBIN protein, length: 259 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 264 290 57
95 % 339 374 35
90 % 344 381 39
70 % 361 405 46
50 % 361 405 84
40 % 1538 1698 4
30 % 1661 1848 6
Entity #3 | Chains: H
HIRUGEN protein, length: 12 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures