Sequence Similarity Clusters for the Entities in PDB 1D3Q

Entity #1 | Chains: A
ALPHA-THROMBIN protein, length: 36 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 303 334 53
95 % 309 342 63 Flexibility: Low
Max RMSD: 5.3, Avg RMSD: 0.7
PDBFlex
90 % 309 342 67
70 % 309 342 81
50 % 309 342 112
40 % 309 342 135
30 % 309 342 146
Entity #2 | Chains: B
ALPHA-THROMBIN protein, length: 259 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 301 332 52
95 % 342 378 53 Flexibility: Low
Max RMSD: 3.5, Avg RMSD: 0.6
PDBFlex
90 % 347 385 56
70 % 364 409 47
50 % 364 409 85
40 % 1695 1885 4
30 % 1704 1899 7
Entity #3 | Chains: H
HIRUGEN protein, length: 12 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures