Sequence Similarity Clusters for the Entities in PDB 1D3P

Entity #1 | Chains: A
ALPHA-THROMBIN protein, length: 36 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 199 338 45
95 % 199 339 62 Flexibility: Low
Max RMSD: 5.3, Avg RMSD: 0.7
PDBFlex
90 % 199 339 66
70 % 199 341 78
50 % 199 341 107
40 % 199 341 130
30 % 199 341 137
Entity #2 | Chains: B
ALPHA-THROMBIN protein, length: 259 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 175 290 58
95 % 218 377 35 Flexibility: Low
Max RMSD: 3.1, Avg RMSD: 0.6
PDBFlex
90 % 220 384 39
70 % 220 408 46
50 % 220 408 84
40 % 1126 1719 4
30 % 1212 1869 6
Entity #3 | Chains: H
HIRUGEN protein, length: 12 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures