1D3I

CRYO-EM STRUCTURE OF HUMAN RHINOVIRUS 14 (HRV14) COMPLEXED WITH A TWO-DOMAIN FRAGMENT OF ITS CELLULAR RECEPTOR, INTERCELLULAR ADHESION MOLECULE-1 (D1D2-ICAM-1). IMPLICATIONS FOR VIRUS-RECEPTOR INTERACTIONS. ALPHA CARBONS ONLY


Sequence Similarity Clusters for the Entities in PDB 1D3I

Entity #1 | Chains: I
PROTEIN (INTERCELLULAR ADHESION MOLECULE-1) protein, length: 185 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 5 5 13226
95 % 6 6 10616
90 % 6 6 10471
70 % 6 6 9940
50 % 6 6 9017
40 % 7 7 7419
30 % 8 8 5799
Entity #2 | Chains: 1
PROTEIN (RHINOVIRUS 14 COAT PROTEIN VP1) protein, length: 289 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 11 26 1711
95 % 11 36 1504
90 % 11 36 1534
70 % 12 37 1474
50 % 12 37 1536
40 % 131 159 276
30 % 131 159 285
Entity #3 | Chains: 2
PROTEIN (RHINOVIRUS 14 COAT PROTEIN VP2) protein, length: 262 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 5 28 1564
95 % 10 35 1571
90 % 11 36 1540
70 % 12 37 1476
50 % 131 159 312
40 % 131 159 326
30 % 163 194 165
Entity #4 | Chains: 3
PROTEIN (RHINOVIRUS 14 COAT PROTEIN VP3) protein, length: 236 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 11 36 1128
95 % 11 36 1517
90 % 11 36 1547
70 % 12 37 1478
50 % 140 168 243
40 % 142 170 261
30 % 178 209 147
Entity #5 | Chains: 4
PROTEIN (RHINOVIRUS 14 COAT PROTEIN VP4) protein, length: 68 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 10 35 1185
95 % 11 36 1545
90 % 11 36 1576
70 % 62 87 571
50 % 97 122 440
40 % 98 123 464
30 % 98 123 461

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures