1D3I

CRYO-EM STRUCTURE OF HUMAN RHINOVIRUS 14 (HRV14) COMPLEXED WITH A TWO-DOMAIN FRAGMENT OF ITS CELLULAR RECEPTOR, INTERCELLULAR ADHESION MOLECULE-1 (D1D2-ICAM-1). IMPLICATIONS FOR VIRUS-RECEPTOR INTERACTIONS. ALPHA CARBONS ONLY


Sequence Similarity Clusters for the Entities in PDB 1D3I

Entity #1 | Chains: I
PROTEIN (INTERCELLULAR ADHESION MOLECULE-1) protein, length: 185 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 5 5 12841
95 % 6 6 10319
90 % 6 6 10187
70 % 6 6 9656
50 % 6 6 8768
40 % 7 7 7227
30 % 8 8 5635
Entity #2 | Chains: 1
PROTEIN (RHINOVIRUS 14 COAT PROTEIN VP1) protein, length: 289 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 11 26 1659
95 % 11 36 1465
90 % 11 36 1494
70 % 12 37 1437
50 % 12 37 1494
40 % 127 155 276
30 % 127 155 284
Entity #3 | Chains: 2
PROTEIN (RHINOVIRUS 14 COAT PROTEIN VP2) protein, length: 262 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 5 28 1516
95 % 10 35 1525
90 % 11 36 1499
70 % 12 37 1438
50 % 129 157 295
40 % 129 157 309
30 % 161 192 164
Entity #4 | Chains: 3
PROTEIN (RHINOVIRUS 14 COAT PROTEIN VP3) protein, length: 236 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 11 36 1087
95 % 11 36 1474
90 % 11 36 1503
70 % 12 37 1440
50 % 136 164 241
40 % 138 166 257
30 % 172 203 149
Entity #5 | Chains: 4
PROTEIN (RHINOVIRUS 14 COAT PROTEIN VP4) protein, length: 68 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 10 35 1135
95 % 11 36 1499
90 % 11 36 1530
70 % 62 87 551
50 % 97 122 423
40 % 98 123 447
30 % 98 123 446

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.