1D3I

CRYO-EM STRUCTURE OF HUMAN RHINOVIRUS 14 (HRV14) COMPLEXED WITH A TWO-DOMAIN FRAGMENT OF ITS CELLULAR RECEPTOR, INTERCELLULAR ADHESION MOLECULE-1 (D1D2-ICAM-1). IMPLICATIONS FOR VIRUS-RECEPTOR INTERACTIONS. ALPHA CARBONS ONLY


Sequence Similarity Clusters for the Entities in PDB 1D3I

Entity #1 | Chains: I
PROTEIN (INTERCELLULAR ADHESION MOLECULE-1) protein, length: 185 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 6 6 10991
95 % 6 6 10644
90 % 6 6 10502
70 % 6 6 9924
50 % 6 6 8953
40 % 7 7 7048
30 % 8 8 5634
Entity #2 | Chains: 1
PROTEIN (RHINOVIRUS 14 COAT PROTEIN VP1) protein, length: 289 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 11 35 1371
95 % 11 36 1599
90 % 11 36 1632
70 % 12 37 1559
50 % 12 37 1610
40 % 132 160 294
30 % 132 160 312
Entity #3 | Chains: 2
PROTEIN (RHINOVIRUS 14 COAT PROTEIN VP2) protein, length: 262 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 10 35 1370
95 % 10 35 1617
90 % 11 36 1566
70 % 12 37 1558
50 % 132 160 341
40 % 132 160 367
30 % 166 197 180
Entity #4 | Chains: 3
PROTEIN (RHINOVIRUS 14 COAT PROTEIN VP3) protein, length: 236 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 11 36 1303
95 % 11 36 1539
90 % 11 36 1571
70 % 12 37 1557
50 % 141 169 254
40 % 143 171 279
30 % 179 210 164
Entity #5 | Chains: 4
PROTEIN (RHINOVIRUS 14 COAT PROTEIN VP4) protein, length: 68 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 11 36 1296
95 % 11 36 1535
90 % 11 36 1567
70 % 62 87 594
50 % 97 122 457
40 % 98 123 487
30 % 98 123 487

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures