1D3I

CRYO-EM STRUCTURE OF HUMAN RHINOVIRUS 14 (HRV14) COMPLEXED WITH A TWO-DOMAIN FRAGMENT OF ITS CELLULAR RECEPTOR, INTERCELLULAR ADHESION MOLECULE-1 (D1D2-ICAM-1). IMPLICATIONS FOR VIRUS-RECEPTOR INTERACTIONS. ALPHA CARBONS ONLY


Sequence Similarity Clusters for the Entities in PDB 1D3I

Entity #1 | Chains: I
PROTEIN (INTERCELLULAR ADHESION MOLECULE-1) protein, length: 185 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 5 5 12303
95 % 6 6 9889
90 % 6 6 9769
70 % 6 6 9271
50 % 6 6 8446
40 % 7 7 6965
30 % 8 8 5420
Entity #2 | Chains: 1
PROTEIN (RHINOVIRUS 14 COAT PROTEIN VP1) protein, length: 289 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 7 22 2007
95 % 7 32 1608
90 % 7 32 1642
70 % 8 33 1612
50 % 8 33 1662
40 % 120 148 277
30 % 120 148 280
Entity #3 | Chains: 2
PROTEIN (RHINOVIRUS 14 COAT PROTEIN VP2) protein, length: 262 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 5 28 1430
95 % 6 31 1676
90 % 7 32 1646
70 % 8 33 1613
50 % 122 150 293
40 % 122 150 312
30 % 147 178 168
Entity #4 | Chains: 3
PROTEIN (RHINOVIRUS 14 COAT PROTEIN VP3) protein, length: 236 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 7 32 1177
95 % 7 32 1625
90 % 7 32 1657
70 % 8 33 1621
50 % 86 114 427
40 % 131 159 258
30 % 157 189 151
Entity #5 | Chains: 4
PROTEIN (RHINOVIRUS 14 COAT PROTEIN VP4) protein, length: 68 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 7 32 1209
95 % 8 33 1567
90 % 8 33 1599
70 % 57 82 561
50 % 91 116 422
40 % 91 116 459
30 % 91 116 451

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.