1D3I

CRYO-EM STRUCTURE OF HUMAN RHINOVIRUS 14 (HRV14) COMPLEXED WITH A TWO-DOMAIN FRAGMENT OF ITS CELLULAR RECEPTOR, INTERCELLULAR ADHESION MOLECULE-1 (D1D2-ICAM-1). IMPLICATIONS FOR VIRUS-RECEPTOR INTERACTIONS. ALPHA CARBONS ONLY


Sequence Similarity Clusters for the Entities in PDB 1D3I

Entity #1 | Chains: I
PROTEIN (INTERCELLULAR ADHESION MOLECULE-1) protein, length: 185 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 5 5 13045
95 % 6 6 10486
90 % 6 6 10352
70 % 6 6 9838
50 % 6 6 8916
40 % 7 7 7334
30 % 8 8 5735
Entity #2 | Chains: 1
PROTEIN (RHINOVIRUS 14 COAT PROTEIN VP1) protein, length: 289 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 11 26 1680
95 % 11 36 1486
90 % 11 36 1516
70 % 12 37 1455
50 % 12 37 1513
40 % 130 158 274
30 % 130 158 282
Entity #3 | Chains: 2
PROTEIN (RHINOVIRUS 14 COAT PROTEIN VP2) protein, length: 262 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 5 28 1533
95 % 10 35 1552
90 % 11 36 1522
70 % 12 37 1456
50 % 131 159 294
40 % 131 159 310
30 % 163 194 165
Entity #4 | Chains: 3
PROTEIN (RHINOVIRUS 14 COAT PROTEIN VP3) protein, length: 236 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 11 36 1102
95 % 11 36 1499
90 % 11 36 1529
70 % 12 37 1458
50 % 139 167 239
40 % 141 169 255
30 % 177 208 146
Entity #5 | Chains: 4
PROTEIN (RHINOVIRUS 14 COAT PROTEIN VP4) protein, length: 68 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 10 35 1154
95 % 11 36 1527
90 % 11 36 1557
70 % 62 87 558
50 % 97 122 428
40 % 98 123 455
30 % 98 123 454

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.