1D3E

CRYO-EM STRUCTURE OF HUMAN RHINOVIRUS 16 (HRV16) COMPLEXED WITH A TWO-DOMAIN FRAGMENT OF ITS CELLULAR RECEPTOR, INTERCELLULAR ADHESION MOLECULE-1 (D1D2-ICAM-1). IMPLICATIONS FOR VIRUS-RECEPTOR INTERACTIONS. ALPHA CARBONS ONLY


Sequence Similarity Clusters for the Entities in PDB 1D3E

Entity #1 | Chains: I
PROTEIN (INTERCELLULAR ADHESION MOLECULE-1) protein, length: 185 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 5 12529
95 % 5 6 10074
90 % 5 6 9941
70 % 5 6 9423
50 % 5 6 8571
40 % 6 7 7064
30 % 7 8 5516
Entity #2 | Chains: 1
PROTEIN (RHINOVIRUS 16 COAT PROTEIN VP1) protein, length: 285 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 54325
95 % 10 10 6555
90 % 10 10 6542
70 % 17 20 2989
50 % 17 20 2927
40 % 119 148 283
30 % 119 148 287
Entity #3 | Chains: 2
PROTEIN (RHINOVIRUS 16 COAT PROTEIN VP2) protein, length: 252 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 55762
95 % 10 10 6600
90 % 10 10 6586
70 % 17 20 3004
50 % 121 150 302
40 % 121 150 318
30 % 146 178 170
Entity #4 | Chains: 3
PROTEIN (RHINOVIRUS 16 COAT PROTEIN VP3) protein, length: 238 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 10 10 6055
95 % 10 10 6650
90 % 10 10 6633
70 % 17 20 3014
50 % 85 114 433
40 % 130 159 263
30 % 157 189 154
Entity #5 | Chains: 4
PROTEIN (RHINOVIRUS 16 COAT PROTEIN VP4) protein, length: 68 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 8 8 9442
95 % 9 9 7686
90 % 13 13 4964
70 % 13 13 4898
50 % 90 116 431
40 % 90 116 470
30 % 90 116 460

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.