1D3E

CRYO-EM STRUCTURE OF HUMAN RHINOVIRUS 16 (HRV16) COMPLEXED WITH A TWO-DOMAIN FRAGMENT OF ITS CELLULAR RECEPTOR, INTERCELLULAR ADHESION MOLECULE-1 (D1D2-ICAM-1). IMPLICATIONS FOR VIRUS-RECEPTOR INTERACTIONS. ALPHA CARBONS ONLY


Sequence Similarity Clusters for the Entities in PDB 1D3E

Entity #1 | Chains: I
PROTEIN (INTERCELLULAR ADHESION MOLECULE-1) protein, length: 185 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 5 13213
95 % 5 6 10605
90 % 5 6 10462
70 % 5 6 9928
50 % 5 6 9005
40 % 6 7 7412
30 % 7 8 5795
Entity #2 | Chains: 1
PROTEIN (RHINOVIRUS 16 COAT PROTEIN VP1) protein, length: 285 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 56945
95 % 10 10 6931
90 % 10 10 6914
70 % 17 20 3141
50 % 17 20 3074
40 % 130 159 275
30 % 130 159 284
Entity #3 | Chains: 2
PROTEIN (RHINOVIRUS 16 COAT PROTEIN VP2) protein, length: 252 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 58443
95 % 10 10 6983
90 % 10 10 6964
70 % 17 20 3157
50 % 130 159 307
40 % 130 159 319
30 % 162 194 165
Entity #4 | Chains: 3
PROTEIN (RHINOVIRUS 16 COAT PROTEIN VP3) protein, length: 238 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 10 10 6417
95 % 10 10 7036
90 % 10 10 7013
70 % 17 20 3169
50 % 139 168 242
40 % 141 170 260
30 % 177 209 147
Entity #5 | Chains: 4
PROTEIN (RHINOVIRUS 16 COAT PROTEIN VP4) protein, length: 68 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 8 8 9937
95 % 9 9 8111
90 % 13 13 5281
70 % 13 13 5200
50 % 96 122 435
40 % 97 123 462
30 % 97 123 459

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.