1D3E

CRYO-EM STRUCTURE OF HUMAN RHINOVIRUS 16 (HRV16) COMPLEXED WITH A TWO-DOMAIN FRAGMENT OF ITS CELLULAR RECEPTOR, INTERCELLULAR ADHESION MOLECULE-1 (D1D2-ICAM-1). IMPLICATIONS FOR VIRUS-RECEPTOR INTERACTIONS. ALPHA CARBONS ONLY


Sequence Similarity Clusters for the Entities in PDB 1D3E

Entity #1 | Chains: I
PROTEIN (INTERCELLULAR ADHESION MOLECULE-1) protein, length: 185 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 5 12841
95 % 5 6 10319
90 % 5 6 10187
70 % 5 6 9656
50 % 5 6 8768
40 % 6 7 7227
30 % 7 8 5635
Entity #2 | Chains: 1
PROTEIN (RHINOVIRUS 16 COAT PROTEIN VP1) protein, length: 285 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 55521
95 % 10 10 6741
90 % 10 10 6727
70 % 17 20 3060
50 % 17 20 3001
40 % 126 155 276
30 % 126 155 284
Entity #3 | Chains: 2
PROTEIN (RHINOVIRUS 16 COAT PROTEIN VP2) protein, length: 252 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 56974
95 % 10 10 6788
90 % 10 10 6772
70 % 17 20 3076
50 % 128 157 295
40 % 128 157 309
30 % 160 192 164
Entity #4 | Chains: 3
PROTEIN (RHINOVIRUS 16 COAT PROTEIN VP3) protein, length: 238 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 10 10 6242
95 % 10 10 6841
90 % 10 10 6821
70 % 17 20 3086
50 % 135 164 241
40 % 137 166 257
30 % 171 203 149
Entity #5 | Chains: 4
PROTEIN (RHINOVIRUS 16 COAT PROTEIN VP4) protein, length: 68 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 8 8 9674
95 % 9 9 7892
90 % 13 13 5094
70 % 13 13 5039
50 % 96 122 423
40 % 97 123 447
30 % 97 123 446

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.