1D3E

CRYO-EM STRUCTURE OF HUMAN RHINOVIRUS 16 (HRV16) COMPLEXED WITH A TWO-DOMAIN FRAGMENT OF ITS CELLULAR RECEPTOR, INTERCELLULAR ADHESION MOLECULE-1 (D1D2-ICAM-1). IMPLICATIONS FOR VIRUS-RECEPTOR INTERACTIONS. ALPHA CARBONS ONLY


Sequence Similarity Clusters for the Entities in PDB 1D3E

Entity #1 | Chains: I
PROTEIN (INTERCELLULAR ADHESION MOLECULE-1) protein, length: 185 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 5 13045
95 % 5 6 10486
90 % 5 6 10352
70 % 5 6 9838
50 % 5 6 8916
40 % 6 7 7334
30 % 7 8 5735
Entity #2 | Chains: 1
PROTEIN (RHINOVIRUS 16 COAT PROTEIN VP1) protein, length: 285 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 56311
95 % 10 10 6842
90 % 10 10 6825
70 % 17 20 3106
50 % 17 20 3045
40 % 129 158 274
30 % 129 158 282
Entity #3 | Chains: 2
PROTEIN (RHINOVIRUS 16 COAT PROTEIN VP2) protein, length: 252 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 57796
95 % 10 10 6894
90 % 10 10 6875
70 % 17 20 3122
50 % 130 159 294
40 % 130 159 310
30 % 162 194 165
Entity #4 | Chains: 3
PROTEIN (RHINOVIRUS 16 COAT PROTEIN VP3) protein, length: 238 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 10 10 6332
95 % 10 10 6949
90 % 10 10 6926
70 % 17 20 3133
50 % 138 167 239
40 % 140 169 255
30 % 176 208 146
Entity #5 | Chains: 4
PROTEIN (RHINOVIRUS 16 COAT PROTEIN VP4) protein, length: 68 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 8 8 9810
95 % 9 9 8011
90 % 13 13 5203
70 % 13 13 5134
50 % 96 122 428
40 % 97 123 455
30 % 97 123 454

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.