1D3E

CRYO-EM STRUCTURE OF HUMAN RHINOVIRUS 16 (HRV16) COMPLEXED WITH A TWO-DOMAIN FRAGMENT OF ITS CELLULAR RECEPTOR, INTERCELLULAR ADHESION MOLECULE-1 (D1D2-ICAM-1). IMPLICATIONS FOR VIRUS-RECEPTOR INTERACTIONS. ALPHA CARBONS ONLY


Sequence Similarity Clusters for the Entities in PDB 1D3E

Entity #1 | Chains: I
PROTEIN (INTERCELLULAR ADHESION MOLECULE-1) protein, length: 185 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 5 13675
95 % 5 6 10962
90 % 5 6 10815
70 % 5 6 10259
50 % 5 6 9296
40 % 6 7 7632
30 % 7 8 5974
Entity #2 | Chains: 1
PROTEIN (RHINOVIRUS 16 COAT PROTEIN VP1) protein, length: 285 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 58557
95 % 10 10 7157
90 % 10 10 7145
70 % 17 20 3244
50 % 17 20 3171
40 % 131 160 279
30 % 131 160 293
Entity #3 | Chains: 2
PROTEIN (RHINOVIRUS 16 COAT PROTEIN VP2) protein, length: 252 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 60095
95 % 10 10 7206
90 % 10 10 7192
70 % 17 20 3262
50 % 131 160 338
40 % 131 160 353
30 % 163 195 169
Entity #4 | Chains: 3
PROTEIN (RHINOVIRUS 16 COAT PROTEIN VP3) protein, length: 238 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 10 10 6636
95 % 10 10 7261
90 % 10 10 7241
70 % 17 20 3275
50 % 140 169 247
40 % 142 171 262
30 % 178 210 153
Entity #5 | Chains: 4
PROTEIN (RHINOVIRUS 16 COAT PROTEIN VP4) protein, length: 68 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 8 8 10308
95 % 9 9 8377
90 % 13 13 5468
70 % 13 13 5373
50 % 96 122 452
40 % 97 123 477
30 % 97 123 470

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures