Sequence Similarity Clusters for the Entities in PDB 1D3D

Entity #1 | Chains: A
ALPHA-THROMBIN protein, length: 28 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 173 335 45
95 % 173 336 61 Flexibility: Low
Max RMSD: 5.3, Avg RMSD: 0.7
PDBFlex
90 % 173 336 66
70 % 173 338 78
50 % 173 338 105
40 % 173 338 128
30 % 173 338 137
Entity #2 | Chains: B
ALPHA-THROMBIN protein, length: 257 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 152 290 57
95 % 189 374 35 Flexibility: Low
Max RMSD: 3.1, Avg RMSD: 0.6
PDBFlex
90 % 190 381 39
70 % 190 405 45
50 % 190 405 81
40 % 1022 1696 4
30 % 1098 1846 6
Entity #3 | Chains: H
HIRUGEN protein, length: 12 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.