Sequence Similarity Clusters for the Entities in PDB 1D3D

Entity #1 | Chains: A
ALPHA-THROMBIN protein, length: 28 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 177 338 45
95 % 177 339 64 Flexibility: Low
Max RMSD: 5.3, Avg RMSD: 0.7
PDBFlex
90 % 177 339 67
70 % 177 341 78
50 % 177 341 107
40 % 177 341 131
30 % 177 341 138
Entity #2 | Chains: B
ALPHA-THROMBIN protein, length: 257 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 153 290 58
95 % 193 377 36 Flexibility: Low
Max RMSD: 3.1, Avg RMSD: 0.6
PDBFlex
90 % 194 384 39
70 % 194 408 46
50 % 194 408 84
40 % 1041 1720 4
30 % 1117 1870 6
Entity #3 | Chains: H
HIRUGEN protein, length: 12 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures