Sequence Similarity Clusters for the Entities in PDB 1D3D

Entity #1 | Chains: A
ALPHA-THROMBIN protein, length: 28 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 169 330 44
95 % 169 331 60
90 % 169 331 65
70 % 169 333 77
50 % 169 333 101
40 % 169 333 125
30 % 169 333 137
Entity #2 | Chains: B
ALPHA-THROMBIN protein, length: 257 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 148 285 55
95 % 185 369 36
90 % 186 376 38
70 % 186 400 45
50 % 186 400 78
40 % 971 1626 4
30 % 1047 1768 6
Entity #3 | Chains: H
HIRUGEN protein, length: 12 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.