Sequence Similarity Clusters for the Entities in PDB 1D3B

Entity #1 | Chains: A,C,E,G,I,K
PROTEIN (SMALL NUCLEAR RIBONUCLEOPROTEIN SM D3) protein, length: 75 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 14310
95 % 1 1 13549 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.3
PDBFlex
90 % 1 1 13333
70 % 1 1 12541
50 % 1 1 11184
40 % 1 1 10138
30 % 1 1 8839
Entity #2 | Chains: B,D,F,H,J,L
PROTEIN (SMALL NUCLEAR RIBONUCLEOPROTEIN ASSOCIATED PROTEIN B) protein, length: 91 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 2260
95 % 1 3 2903 Flexibility: Low
Max RMSD: 2.0, Avg RMSD: 1.1
PDBFlex
90 % 1 3 2943
70 % 1 3 2903
50 % 1 3 2866
40 % 1 3 2818
30 % 1 3 2640

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures