Sequence Similarity Clusters for the Entities in PDB 1D3B

Entity #1 | Chains: A,C,E,G,I,K
PROTEIN (SMALL NUCLEAR RIBONUCLEOPROTEIN SM D3) protein, length: 75 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 14474
95 % 1 1 13576 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.3
PDBFlex
90 % 1 1 13342
70 % 1 1 12513
50 % 1 1 11133
40 % 1 1 10009
30 % 1 1 8544
Entity #2 | Chains: B,D,F,H,J,L
PROTEIN (SMALL NUCLEAR RIBONUCLEOPROTEIN ASSOCIATED PROTEIN B) protein, length: 91 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 2658
95 % 1 3 2979 Flexibility: Low
Max RMSD: 2.0, Avg RMSD: 1.1
PDBFlex
90 % 1 3 3036
70 % 1 3 3005
50 % 1 3 2960
40 % 1 3 2883
30 % 1 3 2672

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures