Sequence Similarity Clusters for the Entities in PDB 1D2Z

Entity #1 | Chains: A,C
DEATH DOMAIN OF PELLE protein, length: 108 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 16175
95 % 1 3 15129 Flexibility: High
Max RMSD: 15.4, Avg RMSD: 10.2
PDBFlex
90 % 1 3 14858
70 % 1 3 13923
50 % 1 3 12359
40 % 1 3 11202
30 % 1 3 9729
Entity #2 | Chains: B,D
DEATH DOMAIN OF TUBE protein, length: 153 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 44468
95 % 1 1 33555 Flexibility: Low
Max RMSD: 1.0, Avg RMSD: 1.0
PDBFlex
90 % 1 1 32067
70 % 1 1 28591
50 % 1 1 24389
40 % 1 1 21453
30 % 1 1 18176

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures