Sequence Similarity Clusters for the Entities in PDB 1D2Z

Entity #1 | Chains: A,C
DEATH DOMAIN OF PELLE protein, length: 108 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 16232
95 % 1 3 15083 Flexibility: High
Max RMSD: 15.4, Avg RMSD: 10.2
PDBFlex
90 % 1 3 14771
70 % 1 3 13816
50 % 1 3 12224
40 % 1 3 10965
30 % 1 3 9329
Entity #2 | Chains: B,D
DEATH DOMAIN OF TUBE protein, length: 153 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 44907
95 % 1 1 37470 Flexibility: Low
Max RMSD: 1.0, Avg RMSD: 1.0
PDBFlex
90 % 1 1 35744
70 % 1 1 31733
50 % 1 1 26988
40 % 1 1 23664
30 % 1 1 19717

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures