Sequence Similarity Clusters for the Entities in PDB 1D2Z

Entity #1 | Chains: A,C
DEATH DOMAIN OF PELLE protein, length: 108 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 16556
95 % 1 3 15446 Flexibility: High
Max RMSD: 15.4, Avg RMSD: 10.2
PDBFlex
90 % 1 3 15162
70 % 1 3 14195
50 % 1 3 12582
40 % 1 3 11398
30 % 1 3 9899
Entity #2 | Chains: B,D
DEATH DOMAIN OF TUBE protein, length: 153 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 45332
95 % 1 1 34157 Flexibility: Low
Max RMSD: 1.0, Avg RMSD: 1.0
PDBFlex
90 % 1 1 32616
70 % 1 1 29058
50 % 1 1 24756
40 % 1 1 21777
30 % 1 1 18443

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures