Sequence Similarity Clusters for the Entities in PDB 1D2I

Entity #1 | Chains: C,D
DNA (5'-D(*TP*AP*TP*TP*AP*TP*AP*GP*AP*TP*CP*TP*AP*TP*AP*A)-3') dna, length: 16 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: A,B
PROTEIN (RESTRICTION ENDONUCLEASE BGLII) protein, length: 223 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 3 14801
95 % 2 3 13914 Flexibility: Medium
Max RMSD: 4.6, Avg RMSD: 3.2
PDBFlex
90 % 2 3 13671
70 % 2 3 12832
50 % 2 3 11428
40 % 2 3 10358
30 % 2 3 8991

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.