Sequence Similarity Clusters for the Entities in PDB 1D1U

Entity #1 | Chains: B
DNA (5'-D(*CP*TP*CP*GP*TP*G)-3') dna, length: 6 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: C
DNA (5'-D(*AP*CP*GP*GP*CP*AP*CP*GP*AP*G)-3') dna, length: 10 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: A
PROTEIN (REVERSE TRANSCRIPTASE) protein, length: 255 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 18 26 1391
95 % 19 27 1802 Flexibility: Low
Max RMSD: 2.3, Avg RMSD: 1.0
PDBFlex
90 % 19 27 1847
70 % 19 27 1867
50 % 19 27 1883
40 % 19 27 1889
30 % 19 27 1822

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.