Sequence Similarity Clusters for the Entities in PDB 1D1U

Entity #1 | Chains: B
DNA (5'-D(*CP*TP*CP*GP*TP*G)-3') dna, length: 6 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: C
DNA (5'-D(*AP*CP*GP*GP*CP*AP*CP*GP*AP*G)-3') dna, length: 10 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: A
PROTEIN (REVERSE TRANSCRIPTASE) protein, length: 255 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 18 26 1445
95 % 19 27 1867
90 % 19 27 1912
70 % 19 27 1930
50 % 19 27 1947
40 % 19 27 1945
30 % 19 27 1878

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.