Sequence Similarity Clusters for the Entities in PDB 1D0J

Entity #1 | Chains: A,B,C,D,E,F
TUMOR NECROSIS FACTOR RECEPTOR ASSOCIATED PROTEIN 2 protein, length: 168 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 2498
95 % 9 10 1072 Flexibility: No
Max RMSD: 2.1, Avg RMSD: 0.5
PDBFlex
90 % 9 10 1094
70 % 9 10 1132
50 % 10 19 907
40 % 14 23 733
30 % 17 27 671
Entity #2 | Chains: G,H,I,J,K
4-1BB LIGAND RECEPTOR protein, length: 7 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.