Sequence Similarity Clusters for the Entities in PDB 1D0J

Entity #1 | Chains: A,B,C,D,E,F
TUMOR NECROSIS FACTOR RECEPTOR ASSOCIATED PROTEIN 2 protein, length: 168 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 6 6 1417
95 % 9 10 1165 Flexibility: Low
Max RMSD: 2.1, Avg RMSD: 0.5
PDBFlex
90 % 9 10 1190
70 % 9 10 1216
50 % 10 19 951
40 % 14 23 775
30 % 17 27 725
Entity #2 | Chains: G,H,I,J,K
4-1BB LIGAND RECEPTOR protein, length: 7 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures