Sequence Similarity Clusters for the Entities in PDB 1D0G

Entity #1 | Chains: R,S,T
DEATH RECEPTOR-5 protein, length: 130 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 8 2565
95 % 6 9 2959 Flexibility: Low
Max RMSD: 3.0, Avg RMSD: 1.2
PDBFlex
90 % 6 9 3007
70 % 6 9 2979
50 % 6 10 2581
40 % 6 10 2532
30 % 6 10 2404
Entity #2 | Chains: A,B,D
APOPTOSIS-2 LIGAND protein, length: 168 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 6 2883
95 % 3 6 3581 Flexibility: Low
Max RMSD: 3.8, Avg RMSD: 1.4
PDBFlex
90 % 3 6 3633
70 % 3 6 3583
50 % 3 6 3488
40 % 3 6 3372
30 % 5 15 1676

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.