Sequence Similarity Clusters for the Entities in PDB 1D0D

Entity #1 | Chains: A
ANTICOAGULANT PROTEIN protein, length: 60 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 4 25406
95 % 1 4 21625 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 1.4
PDBFlex
90 % 1 4 20994
70 % 1 4 19269
50 % 1 4 16721
40 % 1 4 14900
30 % 1 4 12751
Entity #2 | Chains: B
PANCREATIC TRYPSIN INHIBITOR protein, length: 58 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 11 44 377
95 % 20 90 260 Flexibility: Low
Max RMSD: 2.4, Avg RMSD: 0.7
PDBFlex
90 % 25 95 264
70 % 32 115 179
50 % 38 149 187
40 % 38 163 182
30 % 38 163 194

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures