Sequence Similarity Clusters for the Entities in PDB 1D0D

Entity #1 | Chains: A
ANTICOAGULANT PROTEIN protein, length: 60 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 4 17297
95 % 1 4 16035 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 1.4
PDBFlex
90 % 1 4 15702
70 % 1 4 14671
50 % 1 4 12934
40 % 1 4 11601
30 % 1 4 9853
Entity #2 | Chains: B
PANCREATIC TRYPSIN INHIBITOR protein, length: 58 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 22 70 259
95 % 24 91 264 Flexibility: Low
Max RMSD: 2.4, Avg RMSD: 0.7
PDBFlex
90 % 25 95 265
70 % 32 115 182
50 % 38 149 188
40 % 38 164 190
30 % 38 164 208

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures