Sequence Similarity Clusters for the Entities in PDB 1D0D

Entity #1 | Chains: A
ANTICOAGULANT PROTEIN protein, length: 60 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 4 25023
95 % 1 4 21312 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 1.4
PDBFlex
90 % 1 4 20698
70 % 1 4 19008
50 % 1 4 16509
40 % 1 4 14716
30 % 1 4 12592
Entity #2 | Chains: B
PANCREATIC TRYPSIN INHIBITOR protein, length: 58 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 11 44 367
95 % 20 90 256 Flexibility: Low
Max RMSD: 2.4, Avg RMSD: 0.7
PDBFlex
90 % 25 95 260
70 % 32 115 177
50 % 38 149 184
40 % 38 163 179
30 % 38 163 191

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures