Sequence Similarity Clusters for the Entities in PDB 1D01

Entity #1 | Chains: A,B,C,D,E,F
TUMOR NECROSIS FACTOR RECEPTOR ASSOCIATED FACTOR 2 protein, length: 168 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 5 2753
95 % 3 10 1109 Flexibility: Low
Max RMSD: 2.1, Avg RMSD: 0.5
PDBFlex
90 % 3 10 1130
70 % 3 10 1165
50 % 3 19 927
40 % 4 23 756
30 % 5 27 687
Entity #2 | Chains: G,H,I
CD30 PEPTIDE protein, length: 9 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures