Sequence Similarity Clusters for the Entities in PDB 1D01

Entity #1 | Chains: A,B,C,D,E,F
TUMOR NECROSIS FACTOR RECEPTOR ASSOCIATED FACTOR 2 protein, length: 168 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 5 2661
95 % 3 10 1083 Flexibility: Low
Max RMSD: 2.1, Avg RMSD: 0.5
PDBFlex
90 % 3 10 1104
70 % 3 10 1143
50 % 3 19 916
40 % 4 23 740
30 % 5 27 675
Entity #2 | Chains: G,H,I
CD30 PEPTIDE protein, length: 9 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.