Sequence Similarity Clusters for the Entities in PDB 1D00

Entity #1 | Chains: A,B,C,D,E,F,G,H
TUMOR NECROSIS FACTOR RECEPTOR ASSOCIATED PROTEIN 2 protein, length: 168 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 2464
95 % 2 10 1063 Flexibility: No
Max RMSD: 2.1, Avg RMSD: 0.5
PDBFlex
90 % 2 10 1080
70 % 2 10 1119
50 % 2 18 936
40 % 3 21 837
30 % 4 25 761
Entity #2 | Chains: I,J,K,L,M,N,O,P
B-CELL SURFACE ANTIGEN CD40 protein, length: 7 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.