Sequence Similarity Clusters for the Entities in PDB 1CZ8

Entity #1 | Chains: V,W
Vascular endothelial growth factor A protein, length: 94 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 16 29 391
95 % 18 34 412 Flexibility: Low
Max RMSD: 2.9, Avg RMSD: 0.9
PDBFlex
90 % 18 34 447
70 % 18 36 451
50 % 21 39 509
40 % 23 43 512
30 % 23 48 475
Entity #2 | Chains: L,X
LIGHT CHAIN OF NEUTRALIZING ANTIBODY protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 39904
95 % 53 164 69 Flexibility: Low
Max RMSD: 6.5, Avg RMSD: 2.2
PDBFlex
90 % 314 693 3
70 % 1044 2264 1
50 % 2134 4587 1
40 % 2134 4587 1
30 % 2413 5392 1
Entity #3 | Chains: H,Y
HEAVY CHAIN OF NEUTRALIZING ANTIBODY protein, length: 231 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 38586
95 % 2 2 17674 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.5
PDBFlex
90 % 95 212 40
70 % 1036 2222 2
50 % 2135 4587 1
40 % 2135 4587 1
30 % 2414 5392 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.