Sequence Similarity Clusters for the Entities in PDB 1CZ8

Entity #1 | Chains: V,W
Vascular endothelial growth factor A protein, length: 94 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 17 30 379
95 % 19 35 393 Flexibility: Low
Max RMSD: 2.9, Avg RMSD: 0.9
PDBFlex
90 % 19 35 425
70 % 19 37 441
50 % 22 40 504
40 % 24 44 510
30 % 24 49 475
Entity #2 | Chains: L,X
LIGHT CHAIN OF NEUTRALIZING ANTIBODY protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 40543
95 % 53 165 69 Flexibility: Low
Max RMSD: 6.5, Avg RMSD: 2.3
PDBFlex
90 % 317 701 3
70 % 1055 2287 1
50 % 2156 4633 1
40 % 2156 4633 1
30 % 2444 5461 1
Entity #3 | Chains: H,Y
HEAVY CHAIN OF NEUTRALIZING ANTIBODY protein, length: 231 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 39204
95 % 2 2 18006 Flexibility: Low
Max RMSD: 1.3, Avg RMSD: 0.8
PDBFlex
90 % 98 217 39
70 % 1047 2244 2
50 % 2157 4633 1
40 % 2157 4633 1
30 % 2445 5461 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.