Sequence Similarity Clusters for the Entities in PDB 1CZ8

Entity #1 | Chains: V,W
Vascular endothelial growth factor A protein, length: 94 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 19 33 403
95 % 19 35 462 Flexibility: Low
Max RMSD: 2.9, Avg RMSD: 0.9
PDBFlex
90 % 19 35 497
70 % 19 37 512
50 % 22 40 534
40 % 24 44 543
30 % 25 49 499
Entity #2 | Chains: L,X
LIGHT CHAIN OF NEUTRALIZING ANTIBODY protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 19729
95 % 2 2 17927 Flexibility: Low
Max RMSD: 6.5, Avg RMSD: 2.2
PDBFlex
90 % 356 762 2
70 % 1175 2519 1
50 % 2400 5107 1
40 % 2746 5756 1
30 % 3346 7175 1
Entity #3 | Chains: H,Y
HEAVY CHAIN OF NEUTRALIZING ANTIBODY protein, length: 231 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 35188
95 % 2 2 17926 Flexibility: Low
Max RMSD: 1.3, Avg RMSD: 0.8
PDBFlex
90 % 132 275 18
70 % 1165 2478 2
50 % 2401 5107 1
40 % 2747 5756 1
30 % 3347 7175 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures