Sequence Similarity Clusters for the Entities in PDB 1CZ8

Entity #1 | Chains: V,W
Vascular endothelial growth factor A protein, length: 94 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 17 30 398
95 % 19 35 449 Flexibility: Low
Max RMSD: 2.9, Avg RMSD: 0.9
PDBFlex
90 % 19 35 486
70 % 19 37 478
50 % 22 40 511
40 % 24 44 519
30 % 24 49 482
Entity #2 | Chains: L,X
LIGHT CHAIN OF NEUTRALIZING ANTIBODY protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 41051
95 % 58 171 68 Flexibility: Low
Max RMSD: 6.5, Avg RMSD: 2.2
PDBFlex
90 % 331 729 3
70 % 1099 2362 1
50 % 2244 4781 1
40 % 2244 4781 1
30 % 2538 5635 1
Entity #3 | Chains: H,Y
HEAVY CHAIN OF NEUTRALIZING ANTIBODY protein, length: 231 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 39686
95 % 2 2 18217 Flexibility: Low
Max RMSD: 1.3, Avg RMSD: 0.8
PDBFlex
90 % 104 229 38
70 % 1086 2311 2
50 % 2245 4781 1
40 % 2245 4781 1
30 % 2539 5635 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures