Sequence Similarity Clusters for the Entities in PDB 1CXU

Entity #1 | Chains: A
PROTEIN (AVIAN SARCOMA VIRUS INTEGRASE) protein, length: 162 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 17 3097
95 % 4 21 2891 Flexibility: Low
Max RMSD: 3.8, Avg RMSD: 1.2
PDBFlex
90 % 4 21 2928
70 % 4 21 2892
50 % 4 21 2854
40 % 4 21 2813
30 % 4 21 2639

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures