Sequence Similarity Clusters for the Entities in PDB 1CWP

Entity #1 | Chains: D,F
RNA (5'-R(*AP*UP*AP*U)-3') rna, length: 4 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: E
RNA (5'-R(*AP*U)-3') rna, length: 2 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: A,B,C
Coat protein protein, length: 190 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 28113
95 % 1 1 23372 Flexibility: Low
Max RMSD: 0.8, Avg RMSD: 0.7
PDBFlex
90 % 1 1 22603
70 % 2 5 4402
50 % 2 5 4228
40 % 2 5 4034
30 % 2 5 3728

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.