Sequence Similarity Clusters for the Entities in PDB 1CWP

Entity #1 | Chains: D,F
RNA (5'-R(*AP*UP*AP*U)-3') rna, length: 4 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: E
RNA (5'-R(*AP*U)-3') rna, length: 2 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: A,B,C
Coat protein protein, length: 190 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 26774
95 % 1 1 22255
90 % 1 1 21546
70 % 2 5 4167
50 % 2 5 4028
40 % 2 5 3854
30 % 2 5 3556

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.