Sequence Similarity Clusters for the Entities in PDB 1CVW

Entity #1 | Chains: L
COAGULATION FACTOR VIIA (LIGHT CHAIN) (DES-GLA) protein, length: 55 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 26 30 1724
95 % 26 30 2029 Flexibility: No
Max RMSD: 1.8, Avg RMSD: 0.3
PDBFlex
90 % 26 30 2079
70 % 26 30 2077
50 % 26 30 2090
40 % 95 118 494
30 % 127 152 383
Entity #2 | Chains: H
COAGULATION FACTOR VIIA (HEAVY CHAIN) (DES-GLA) protein, length: 254 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 73 97 349
95 % 75 101 419 Flexibility: Low
Max RMSD: 4.0, Avg RMSD: 0.7
PDBFlex
90 % 75 101 455
70 % 75 101 487
50 % 75 101 538
40 % 1507 1873 4
30 % 1516 1887 7

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures