Sequence Similarity Clusters for the Entities in PDB 1CVW

Entity #1 | Chains: L
COAGULATION FACTOR VIIA (LIGHT CHAIN) (DES-GLA) protein, length: 55 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 26 30 1460
95 % 26 30 1943 Flexibility: No
Max RMSD: 1.8, Avg RMSD: 0.3
PDBFlex
90 % 26 30 1989
70 % 26 30 2015
50 % 26 30 2025
40 % 95 118 466
30 % 95 118 463
Entity #2 | Chains: H
COAGULATION FACTOR VIIA (HEAVY CHAIN) (DES-GLA) protein, length: 254 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 73 97 293
95 % 75 101 376 Flexibility: Low
Max RMSD: 4.0, Avg RMSD: 0.7
PDBFlex
90 % 75 101 404
70 % 75 101 438
50 % 75 101 509
40 % 1380 1698 4
30 % 1488 1848 6

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures