Sequence Similarity Clusters for the Entities in PDB 1CVS

Entity #1 | Chains: A,B
FIBROBLAST GROWTH FACTOR 2 protein, length: 132 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 11 15 1679
95 % 16 20 1773 Flexibility: No
Max RMSD: 1.8, Avg RMSD: 0.4
PDBFlex
90 % 16 20 1816
70 % 16 20 1842
50 % 95 125 167
40 % 96 126 182
30 % 97 127 193
Entity #2 | Chains: C,D
FIBROBLAST GROWTH FACTOR RECEPTOR 1 protein, length: 225 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 3 13018
95 % 3 5 7898 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 1.0
PDBFlex
90 % 3 5 7847
70 % 10 15 1881
50 % 10 15 1917
40 % 10 15 1921
30 % 10 15 1853

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures