Sequence Similarity Clusters for the Entities in PDB 1CVS

Entity #1 | Chains: A,B
FIBROBLAST GROWTH FACTOR 2 protein, length: 132 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 4 7583
95 % 17 21 1685 Flexibility: No
Max RMSD: 1.8, Avg RMSD: 0.4
PDBFlex
90 % 17 21 1725
70 % 17 21 1735
50 % 112 142 164
40 % 113 143 177
30 % 114 144 195
Entity #2 | Chains: C,D
FIBROBLAST GROWTH FACTOR RECEPTOR 1 protein, length: 225 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 13152
95 % 3 6 7209 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 1.0
PDBFlex
90 % 3 6 7175
70 % 10 16 1913
50 % 10 16 1945
40 % 10 16 1925
30 % 34 44 677

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures