Sequence Similarity Clusters for the Entities in PDB 1CVJ

Entity #1 | Chains: M,N,O,P,Q,R,S,T
5'-R(*AP*AP*AP*AP*AP*AP*AP*AP*AP*AP*A)-3' rna, length: 11 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: A,B,C,D,E,F,G,H
POLYADENYLATE BINDING PROTEIN 1 protein, length: 190 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 8667
95 % 1 1 8834
90 % 1 1 8749
70 % 1 1 8369
50 % 1 1 7605
40 % 1 1 6985
30 % 1 2 5404

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.