Sequence Similarity Clusters for the Entities in PDB 1CVJ

Entity #1 | Chains: M,N,O,P,Q,R,S,T
5'-R(*AP*AP*AP*AP*AP*AP*AP*AP*AP*AP*A)-3' rna, length: 11 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: A,B,C,D,E,F,G,H
POLYADENYLATE BINDING PROTEIN 1 protein, length: 190 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 9293
95 % 1 1 9473 Flexibility: Low
Max RMSD: 0.7, Avg RMSD: 0.5
PDBFlex
90 % 1 1 9365
70 % 1 1 8953
50 % 1 1 8103
40 % 1 1 7438
30 % 2 4 4215

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures