Sequence Similarity Clusters for the Entities in PDB 1CVJ

Entity #1 | Chains: M,N,O,P,Q,R,S,T
5'-R(*AP*AP*AP*AP*AP*AP*AP*AP*AP*AP*A)-3' rna, length: 11 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: A,B,C,D,E,F,G,H
POLYADENYLATE BINDING PROTEIN 1 protein, length: 190 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 9050
95 % 1 1 9224 Flexibility: Low
Max RMSD: 0.7, Avg RMSD: 0.5
PDBFlex
90 % 1 1 9133
70 % 1 1 8719
50 % 1 1 7891
40 % 1 1 7248
30 % 2 4 4092

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.