Sequence Similarity Clusters for the Entities in PDB 1CU4

Entity #1 | Chains: L
FAB LIGHT CHAIN protein, length: 219 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 39458
95 % 40 51 676 Flexibility: Low
Max RMSD: 6.4, Avg RMSD: 1.8
PDBFlex
90 % 40 52 678
70 % 1201 2265 1
50 % 2454 4589 1
40 % 2454 4589 1
30 % 2806 5394 1
Entity #2 | Chains: H
FAB HEAVY CHAIN protein, length: 217 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 39686
95 % 2 2 30318
90 % 2 2 29129
70 % 1193 2223 2
50 % 2455 4589 1
40 % 2455 4589 1
30 % 2807 5394 1
Entity #3 | Chains: P
RECOGNITION PEPTIDE protein, length: 10 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.