Sequence Similarity Clusters for the Entities in PDB 1CU4

Entity #1 | Chains: L
FAB LIGHT CHAIN protein, length: 219 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 40481
95 % 40 51 690 Flexibility: Low
Max RMSD: 6.4, Avg RMSD: 1.8
PDBFlex
90 % 40 52 695
70 % 1248 2346 1
50 % 2549 4752 1
40 % 2549 4752 1
30 % 2919 5606 1
Entity #2 | Chains: H
FAB HEAVY CHAIN protein, length: 217 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 40711
95 % 2 2 31107
90 % 2 2 29872
70 % 1237 2299 2
50 % 2550 4752 1
40 % 2550 4752 1
30 % 2920 5606 1
Entity #3 | Chains: P
RECOGNITION PEPTIDE protein, length: 10 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.