Sequence Similarity Clusters for the Entities in PDB 1CT8

Entity #1 | Chains: A,C
7C8 FAB FRAGMENT; SHORT CHAIN protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 45516
95 % 1 1 37940 Flexibility: Low
Max RMSD: 0.8, Avg RMSD: 0.8
PDBFlex
90 % 22 39 1095
70 % 924 2538 1
50 % 1892 5152 1
40 % 2190 5806 1
30 % 2666 7240 1
Entity #2 | Chains: B,D
7C8 FAB FRAGMENT; LONG CHAIN protein, length: 220 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 45515
95 % 1 1 37939 Flexibility: Low
Max RMSD: 1.1, Avg RMSD: 1.1
PDBFlex
90 % 1 1 36183
70 % 912 2497 2
50 % 1893 5152 1
40 % 2191 5806 1
30 % 2667 7240 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures