Sequence Similarity Clusters for the Entities in PDB 1CT8

Entity #1 | Chains: A,C
7C8 FAB FRAGMENT; SHORT CHAIN protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 42247
95 % 1 1 32163 Flexibility: Low
Max RMSD: 0.8, Avg RMSD: 0.8
PDBFlex
90 % 22 39 1076
70 % 907 2474 1
50 % 1852 5011 1
40 % 1852 5011 1
30 % 2113 5941 1
Entity #2 | Chains: B,D
7C8 FAB FRAGMENT; LONG CHAIN protein, length: 220 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 41634
95 % 1 1 31799
90 % 1 1 30559
70 % 892 2424 2
50 % 1853 5011 1
40 % 1853 5011 1
30 % 2114 5941 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures