Sequence Similarity Clusters for the Entities in PDB 1CSB

Entity #1 | Chains: A,D
CATHEPSIN B light chain protein, length: 47 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 16821
95 % 3 3 15665 Flexibility: Low
Max RMSD: 0.9, Avg RMSD: 0.6
PDBFlex
90 % 3 4 13781
70 % 3 4 12935
50 % 3 4 11533
40 % 3 4 10449
30 % 3 4 9113
Entity #2 | Chains: B,E
CATHEPSIN B heavy chain protein, length: 205 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 16042
95 % 3 3 14988 Flexibility: Low
Max RMSD: 0.7, Avg RMSD: 0.5
PDBFlex
90 % 3 3 14711
70 % 3 4 12000
50 % 3 4 10717
40 % 3 4 9703
30 % 3 4 8455

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures