Sequence Similarity Clusters for the Entities in PDB 1CSB

Entity #1 | Chains: A,D
CATHEPSIN B light chain protein, length: 47 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 16167
95 % 3 3 15140 Flexibility: Low
Max RMSD: 0.9, Avg RMSD: 0.6
PDBFlex
90 % 3 4 13301
70 % 3 4 12503
50 % 3 4 11154
40 % 3 4 10120
30 % 3 4 8827
Entity #2 | Chains: B,E
CATHEPSIN B heavy chain protein, length: 205 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 15408
95 % 3 3 14464 Flexibility: Low
Max RMSD: 0.7, Avg RMSD: 0.5
PDBFlex
90 % 3 3 14194
70 % 3 4 11592
50 % 3 4 10358
40 % 3 4 9386
30 % 3 4 8179

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.