Sequence Similarity Clusters for the Entities in PDB 1CQT

Entity #1 | Chains: M,O
DNA (5'-D(*TP*GP*TP*AP*TP*GP*CP*AP*AP*AP*TP*AP*AP*GP*G)-3') dna, length: 15 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: N,P
DNA (5'-D(*AP*CP*CP*TP*TP*AP*TP*TP*TP*GP*CP*AP*TP*AP*C)-3') dna, length: 15 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: A,B
POU DOMAIN, CLASS 2, TRANSCRIPTION FACTOR 1 protein, length: 163 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 26096
95 % 5 6 8716
90 % 5 6 8624
70 % 5 6 8244
50 % 8 9 4455
40 % 9 10 2655
30 % 9 10 2486
Entity #4 | Chains: I,J
POU DOMAIN, CLASS 2, ASSOCIATING FACTOR 1 protein, length: 44 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 45057
95 % 1 1 33668
90 % 1 1 32229
70 % 1 1 28827
50 % 1 1 24760
40 % 1 1 21887
30 % 1 1 18577

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.