Sequence Similarity Clusters for the Entities in PDB 1CQT

Entity #1 | Chains: M,O
DNA (5'-D(*TP*GP*TP*AP*TP*GP*CP*AP*AP*AP*TP*AP*AP*GP*G)-3') dna, length: 15 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: N,P
DNA (5'-D(*AP*CP*CP*TP*TP*AP*TP*TP*TP*GP*CP*AP*TP*AP*C)-3') dna, length: 15 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: A,B
POU DOMAIN, CLASS 2, TRANSCRIPTION FACTOR 1 protein, length: 163 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 28516
95 % 5 6 9528 Flexibility: Low
Max RMSD: 7.1, Avg RMSD: 2.8
PDBFlex
90 % 5 6 9416
70 % 5 6 9001
50 % 8 9 4866
40 % 9 10 2893
30 % 9 10 2706
Entity #4 | Chains: I,J
POU DOMAIN, CLASS 2, ASSOCIATING FACTOR 1 protein, length: 44 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 49008
95 % 1 1 36636 Flexibility: Low
Max RMSD: 1.2, Avg RMSD: 1.2
PDBFlex
90 % 1 1 34995
70 % 1 1 31122
50 % 1 1 26623
40 % 1 1 23523
30 % 1 1 19995

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.