Sequence Similarity Clusters for the Entities in PDB 1CQT

Entity #1 | Chains: M,O
DNA (5'-D(*TP*GP*TP*AP*TP*GP*CP*AP*AP*AP*TP*AP*AP*GP*G)-3') dna, length: 15 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: N,P
DNA (5'-D(*AP*CP*CP*TP*TP*AP*TP*TP*TP*GP*CP*AP*TP*AP*C)-3') dna, length: 15 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: A,B
POU DOMAIN, CLASS 2, TRANSCRIPTION FACTOR 1 protein, length: 163 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 27016
95 % 5 6 9014
90 % 5 6 8913
70 % 5 6 8527
50 % 8 9 4606
40 % 9 10 2755
30 % 9 10 2576
Entity #4 | Chains: I,J
POU DOMAIN, CLASS 2, ASSOCIATING FACTOR 1 protein, length: 44 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 46653
95 % 1 1 34856
90 % 1 1 33347
70 % 1 1 29784
50 % 1 1 25563
40 % 1 1 22595
30 % 1 1 19197

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.