Sequence Similarity Clusters for the Entities in PDB 1CQJ

Entity #1 | Chains: A,D
SUCCINYL-COA SYNTHETASE ALPHA CHAIN protein, length: 286 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 6 5129
95 % 7 11 2593 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.4
PDBFlex
90 % 7 11 2649
70 % 7 11 2638
50 % 18 24 1471
40 % 18 24 1472
30 % 18 24 1456
Entity #2 | Chains: B,E
SUCCINYL-COA SYNTHETASE BETA CHAIN protein, length: 385 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 7 10 2238
95 % 7 11 2545 Flexibility: Low
Max RMSD: 1.1, Avg RMSD: 0.6
PDBFlex
90 % 7 11 2604
70 % 7 11 2594
50 % 7 11 2575
40 % 15 21 1574
30 % 15 21 1558

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures