Sequence Similarity Clusters for the Entities in PDB 1CQJ

Entity #1 | Chains: A,D
SUCCINYL-COA SYNTHETASE ALPHA CHAIN protein, length: 286 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 7 10 2624
95 % 7 11 2627 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.4
PDBFlex
90 % 7 11 2699
70 % 7 11 2674
50 % 18 24 1494
40 % 18 24 1480
30 % 18 24 1467
Entity #2 | Chains: B,E
SUCCINYL-COA SYNTHETASE BETA CHAIN protein, length: 385 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 7 11 2332
95 % 7 11 2619 Flexibility: Low
Max RMSD: 1.1, Avg RMSD: 0.6
PDBFlex
90 % 7 11 2690
70 % 7 11 2666
50 % 7 11 2642
40 % 15 21 1606
30 % 15 21 1587

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures