Sequence Similarity Clusters for the Entities in PDB 1CQJ

Entity #1 | Chains: A,D
SUCCINYL-COA SYNTHETASE ALPHA CHAIN protein, length: 286 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 6 4922
95 % 7 11 2486 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.4
PDBFlex
90 % 7 11 2542
70 % 7 11 2529
50 % 17 23 1452
40 % 17 23 1463
30 % 17 23 1439
Entity #2 | Chains: B,E
SUCCINYL-COA SYNTHETASE BETA CHAIN protein, length: 385 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 7 10 2147
95 % 7 11 2435 Flexibility: Low
Max RMSD: 1.1, Avg RMSD: 0.6
PDBFlex
90 % 7 11 2494
70 % 7 11 2481
50 % 7 11 2471
40 % 14 20 1591
30 % 14 20 1564

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.