Sequence Similarity Clusters for the Entities in PDB 1CQJ

Entity #1 | Chains: A,D
SUCCINYL-COA SYNTHETASE ALPHA CHAIN protein, length: 286 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 6 5033
95 % 7 11 2554 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.4
PDBFlex
90 % 7 11 2612
70 % 7 11 2597
50 % 17 23 1480
40 % 17 23 1491
30 % 17 23 1463
Entity #2 | Chains: B,E
SUCCINYL-COA SYNTHETASE BETA CHAIN protein, length: 385 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 7 10 2208
95 % 7 11 2504 Flexibility: Low
Max RMSD: 1.1, Avg RMSD: 0.6
PDBFlex
90 % 7 11 2565
70 % 7 11 2551
50 % 7 11 2538
40 % 14 20 1630
30 % 14 20 1602

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures