Sequence Similarity Clusters for the Entities in PDB 1CQI

Entity #1 | Chains: A,D
PROTEIN (SUCCINYL-COA SYNTHETASE ALPHA CHAIN) protein, length: 286 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 10 10 2612
95 % 11 11 2614 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.4
PDBFlex
90 % 11 11 2682
70 % 11 11 2663
50 % 24 24 1481
40 % 24 24 1472
30 % 24 24 1460
Entity #2 | Chains: B,E
PROTEIN (SUCCINYL-COA SYNTHETASE BETA CHAIN) protein, length: 385 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 11 11 2319
95 % 11 11 2605 Flexibility: Low
Max RMSD: 1.1, Avg RMSD: 0.6
PDBFlex
90 % 11 11 2672
70 % 11 11 2654
50 % 11 11 2631
40 % 21 21 1595
30 % 21 21 1577

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures