Sequence Similarity Clusters for the Entities in PDB 1CQI

Entity #1 | Chains: A,D
PROTEIN (SUCCINYL-COA SYNTHETASE ALPHA CHAIN) protein, length: 286 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 6 6 4725
95 % 11 11 2400 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.4
PDBFlex
90 % 11 11 2458
70 % 11 11 2447
50 % 23 23 1409
40 % 23 23 1429
30 % 23 23 1404
Entity #2 | Chains: B,E
PROTEIN (SUCCINYL-COA SYNTHETASE BETA CHAIN) protein, length: 385 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 10 10 2056
95 % 11 11 2348 Flexibility: Low
Max RMSD: 1.1, Avg RMSD: 0.6
PDBFlex
90 % 11 11 2409
70 % 11 11 2398
50 % 11 11 2385
40 % 20 20 1547
30 % 20 20 1524

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.