Sequence Similarity Clusters for the Entities in PDB 1CQF

Entity #1 | Chains: A,B,C,D,E
SHIGA TOXIN B-CHAIN protein, length: 69 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 10 515
95 % 7 14 437 Flexibility: No
Max RMSD: 1.0, Avg RMSD: 0.3
PDBFlex
90 % 7 14 476
70 % 7 14 508
50 % 11 22 348
40 % 11 22 378
30 % 11 22 381

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

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Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 1C4Q 1 A, B, C, D, E PROTEIN (SHIGA-LIKE TOXIN I SUBUNIT B) RECEPTOR-BINDING DOMAIN 562
2 4M1U 2 B, C, D, E, F Shiga toxin 2 B subunit Stx2 subunit B (unp entries 20-89) 562
3 1C48 1 A, B, C, D, E PROTEIN (SHIGA-LIKE TOXIN I B SUBUNIT) RECEPTOR-BINDING DOMAIN 12371
4 1R4P 2 B, C, D, E, F shiga-like toxin type II B subunit 562
5 2GA4 2 B, C, D, E, F Shiga-like toxin II subunit B 1981161
6 1D1I 1 A, B, C, D, E SHIGA TOXIN B-CHAIN SHIGA TOXIN I BINDING DOMAIN 562
7 2BOS 1 A, B, C, D, E PROTEIN (SHIGA-LIKE TOXIN IIE B SUBUNIT) COMPLEXED WITH PK-MCO, AN ANALOGUE OF GB3 (GLOBOTRIAOSYL CERAMIDE) RECEPTOR-BINDING DOMAIN 562
8 2XSC 1 A, B, C, D, E SHIGA-LIKE TOXIN 1 SUBUNIT B RESIDUES 21-89 562
9 1D1K 1 A, B, C, D, E SHIGA-LIKE TOXIN I SUBUNIT B SHIGA TOXIN I BINDING DOMAIN 12371
10 1QNU 1 A, B, C, D, E Shiga toxin 1 variant B subunit COMPLEXED WITH BRIDGE-STARFISH MOLECULE, A SUBNANOMOLAR TAILORED MULTIVALENT INHIBITOR RECEPTOR-BINDING DOMAIN 562
11 1CQF 1 A, B, C, D, E SHIGA TOXIN B-CHAIN COMPLEXED WITH TRISACCHARIDE OF GLYCOLIPID GB3 SHIGA-LIKE TOXIN I BINDING DOMAIN 562
12 1QOH 1 A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T SHIGA-LIKE TOXIN IIE B SUBUNIT COMPLEXED WITH PK-MCO, AN ANALOGUE OF GB3 (GLOBOTRIAOSYL CERAMIDE) RECEPTOR-BINDING DOMAIN 562
13 1CZW 1 A, B, C, D, E, F, G, H, I, J SHIGA TOXIN B-CHAIN SHIGA-LIKE TOXIN I BINDING DOMAIN 12371
14 1R4Q 2 B, C, D, E, F, G, H, I, J, K Shigella toxin chain B 622
15 3MXG 1 A, B, C, D, E, F, G, H, I, J Shiga-like toxin 2 subunit B unp residues 20-89 562
16 1DM0 2 B, C, D, E, F, G, H, I, J, K SHIGA TOXIN B SUBUNIT 622
17 1BOS 1 A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T SHIGA-LIKE TOXIN I B SUBUNIT COMPLEXED WITH PK-MCO, AN ANALOGUE OF GB3 (GLOBOTRIAOSYL CERAMIDE) RECEPTOR-BINDING DOMAIN 69932
18 1CZG 1 A, B, C, D, E SHIGA TOXIN B-CHAIN SHIGA-LIKE TOXIN I BINDING DOMAIN 12371
19 4P2C 2 B, C, D, E, F Shiga toxin 2e, subunit B 562
20 6FE4 1 A, B, C, D, E Shiga-like toxin 2 subunit B 1981161
21 2C5C 1 A, B, C, D, E, F, G, H, I, J SHIGA-LIKE TOXIN 1 B SUBUNIT RECEPTOR-BINDING DOMAIN, RESIDUES 21-89 12371
22 4ULL 1 A SHIGA-LIKE TOXIN I SUBUNIT B 69932