Sequence Similarity Clusters for the Entities in PDB 1CPJ

Entity #1 | Chains: A,B
CATHEPSIN B protein, length: 260 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 12687
95 % 3 3 12250 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.4
PDBFlex
90 % 3 3 12075
70 % 15 21 1971
50 % 18 25 1606
40 % 18 25 1623
30 % 177 274 116

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures