Sequence Similarity Clusters for the Entities in PDB 1CPI

Entity #1 | Chains: A,B
HIV-1 PROTEASE protein, length: 99 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 96 123 106
95 % 96 123 132
90 % 434 656 3
70 % 451 680 5
50 % 458 706 5
40 % 468 716 8
30 % 470 718 11
Entity #2 | Chains: C
CYCLIC PEPTIDE INHIBITOR protein, length: 6 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures