Sequence Similarity Clusters for the Entities in PDB 1CPC

Entity #1 | Chains: A,K
C-PHYCOCYANIN (ALPHA SUBUNIT) protein, length: 162 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 43662
95 % 1 1 33005 Flexibility: No
Max RMSD: 0.2, Avg RMSD: 0.2
PDBFlex
90 % 1 1 31548
70 % 7 36 285
50 % 7 42 286
40 % 9 54 61
30 % 22 143 18
Entity #2 | Chains: B,L
C-PHYCOCYANIN (BETA SUBUNIT) protein, length: 172 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 43146
95 % 1 1 32665 Flexibility: No
Max RMSD: 0.3, Avg RMSD: 0.3
PDBFlex
90 % 1 1 31222
70 % 7 39 284
50 % 14 62 38
40 % 14 87 24
30 % 23 143 18

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures