Sequence Similarity Clusters for the Entities in PDB 1CPC

Entity #1 | Chains: A,K
C-PHYCOCYANIN (ALPHA SUBUNIT) protein, length: 162 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 32965
95 % 1 1 28425 Flexibility: No
Max RMSD: 0.2, Avg RMSD: 0.2
PDBFlex
90 % 1 1 27321
70 % 7 36 297
50 % 7 42 301
40 % 9 54 85
30 % 22 143 15
Entity #2 | Chains: B,L
C-PHYCOCYANIN (BETA SUBUNIT) protein, length: 172 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 17225
95 % 1 2 15960 Flexibility: No
Max RMSD: 0.3, Avg RMSD: 0.3
PDBFlex
90 % 1 2 15635
70 % 7 39 296
50 % 14 62 40
40 % 14 87 34
30 % 23 143 15

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures