Sequence Similarity Clusters for the Entities in PDB 1CPC

Entity #1 | Chains: A,K
C-PHYCOCYANIN (ALPHA SUBUNIT) protein, length: 162 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 42466
95 % 1 1 32093 Flexibility: No
Max RMSD: 0.2, Avg RMSD: 0.2
PDBFlex
90 % 1 1 30712
70 % 7 31 374
50 % 7 37 406
40 % 7 46 286
30 % 18 124 125
Entity #2 | Chains: B,L
C-PHYCOCYANIN (BETA SUBUNIT) protein, length: 172 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 41961
95 % 1 1 31758 Flexibility: No
Max RMSD: 0.3, Avg RMSD: 0.3
PDBFlex
90 % 1 1 30390
70 % 7 34 373
50 % 12 54 246
40 % 12 76 199
30 % 19 124 125

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.