Sequence Similarity Clusters for the Entities in PDB 1COW

Entity #1 | Chains: A,B,C
BOVINE MITOCHONDRIAL F1-ATPASE protein, length: 510 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 19 29 350
95 % 24 41 291
90 % 24 41 304
70 % 32 60 169
50 % 38 72 168
40 % 38 72 183
30 % 38 72 196
Entity #2 | Chains: D,E,F
BOVINE MITOCHONDRIAL F1-ATPASE protein, length: 482 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 24 40 213
95 % 25 42 292
90 % 25 42 305
70 % 39 73 141
50 % 39 73 169
40 % 39 73 184
30 % 39 73 197
Entity #3 | Chains: G
BOVINE MITOCHONDRIAL F1-ATPASE protein, length: 272 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 23 39 910
95 % 23 39 1221
90 % 23 39 1247
70 % 24 41 1214
50 % 24 41 1275
40 % 35 66 632
30 % 35 66 616

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures