Sequence Similarity Clusters for the Entities in PDB 1COV

Entity #1 | Chains: 1
COXSACKIEVIRUS COAT PROTEIN protein, length: 281 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 26736
95 % 2 4 17440 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.4
PDBFlex
90 % 2 4 17091
70 % 4 6 11168
50 % 7 14 4438
40 % 78 159 276
30 % 78 159 285
Entity #2 | Chains: 2
COXSACKIEVIRUS COAT PROTEIN protein, length: 263 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 26971
95 % 2 4 17672 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.4
PDBFlex
90 % 2 4 17316
70 % 7 15 4360
50 % 73 159 303
40 % 73 159 315
30 % 90 194 165
Entity #3 | Chains: 3
COXSACKIEVIRUS COAT PROTEIN protein, length: 238 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 3 27298
95 % 2 4 18030
90 % 2 4 17658
70 % 7 15 4370
50 % 78 168 240
40 % 78 170 258
30 % 96 209 148
Entity #4 | Chains: 4
COXSACKIEVIRUS COAT PROTEIN protein, length: 68 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 29905
95 % 4 8 9966 Flexibility: Low
Max RMSD: 0.9, Avg RMSD: 0.8
PDBFlex
90 % 7 12 6151
70 % 37 87 565
50 % 65 122 435
40 % 66 123 463
30 % 66 123 460

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.