Sequence Similarity Clusters for the Entities in PDB 1COH

Entity #1 | Chains: A,C
HEMOGLOBIN (FERROUS CARBONMONOXY) (ALPHA CHAIN) protein, length: 141 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 251 254 12
95 % 262 265 16 Flexibility: Low
Max RMSD: 3.8, Avg RMSD: 0.7
PDBFlex
90 % 262 265 17
70 % 327 332 17
50 % 743 754 4
40 % 748 759 7
30 % 1279 1294 6
Entity #2 | Chains: B,D
HEMOGLOBIN (COBALTOUS DEOXY) (BETA CHAIN) protein, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 212 214 43
95 % 248 250 20 Flexibility: Low
Max RMSD: 1.5, Avg RMSD: 0.6
PDBFlex
90 % 253 255 21
70 % 341 346 14
50 % 744 754 4
40 % 749 759 7
30 % 1280 1294 6

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures