Sequence Similarity Clusters for the Entities in PDB 1COH

Entity #1 | Chains: A,C
HEMOGLOBIN (FERROUS CARBONMONOXY) (ALPHA CHAIN) protein, length: 141 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 219 222 22
95 % 247 250 19 Flexibility: Low
Max RMSD: 3.8, Avg RMSD: 0.7
PDBFlex
90 % 248 251 20
70 % 327 332 15
50 % 743 754 4
40 % 748 759 8
30 % 1203 1218 8
Entity #2 | Chains: B,D
HEMOGLOBIN (COBALTOUS DEOXY) (BETA CHAIN) protein, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 167 169 51
95 % 248 250 18 Flexibility: Low
Max RMSD: 1.5, Avg RMSD: 0.6
PDBFlex
90 % 253 255 19
70 % 341 346 14
50 % 744 754 4
40 % 749 759 8
30 % 1204 1218 8

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures