Sequence Similarity Clusters for the Entities in PDB 1CN3

Entity #1 | Chains: A,B,C,D,E
COAT PROTEIN VP1 protein, length: 283 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 5 1856
95 % 9 9 1188 Flexibility: No
Max RMSD: 0.8, Avg RMSD: 0.3
PDBFlex
90 % 9 9 1212
70 % 9 9 1239
50 % 44 46 135
40 % 44 46 148
30 % 46 50 146
Entity #2 | Chains: F
FRAGMENT OF COAT PROTEIN VP2 protein, length: 29 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 76814
95 % 1 1 53490
90 % 1 1 50679
70 % 1 1 44328
50 % 1 1 37791
40 % 1 1 33317
30 % 1 1 28256

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures