Sequence Similarity Clusters for the Entities in PDB 1CN3

Entity #1 | Chains: A,B,C,D,E
COAT PROTEIN VP1 protein, length: 283 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 5 1773
95 % 9 9 1142 Flexibility: No
Max RMSD: 0.8, Avg RMSD: 0.3
PDBFlex
90 % 9 9 1169
70 % 9 9 1203
50 % 44 46 126
40 % 44 46 144
30 % 46 50 141
Entity #2 | Chains: F
FRAGMENT OF COAT PROTEIN VP2 protein, length: 29 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 74580
95 % 1 1 52040
90 % 1 1 49371
70 % 1 1 43223
50 % 1 1 36872
40 % 1 1 32516
30 % 1 1 27585

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.