Sequence Similarity Clusters for the Entities in PDB 1CN3

Entity #1 | Chains: A,B,C,D,E
COAT PROTEIN VP1 protein, length: 283 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 5 1824
95 % 9 9 1171 Flexibility: No
Max RMSD: 0.8, Avg RMSD: 0.3
PDBFlex
90 % 9 9 1199
70 % 9 9 1226
50 % 44 46 129
40 % 44 46 148
30 % 46 50 144
Entity #2 | Chains: F
FRAGMENT OF COAT PROTEIN VP2 protein, length: 29 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 75962
95 % 1 1 52906
90 % 1 1 50145
70 % 1 1 43871
50 % 1 1 37404
40 % 1 1 32971
30 % 1 1 27959

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures