Sequence Similarity Clusters for the Entities in PDB 1CN3

Entity #1 | Chains: A,B,C,D,E
COAT PROTEIN VP1 protein, length: 283 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 5 5 1738
95 % 9 9 1125
90 % 9 9 1152
70 % 9 9 1184
50 % 44 46 119
40 % 44 46 139
30 % 46 50 141
Entity #2 | Chains: F
FRAGMENT OF COAT PROTEIN VP2 protein, length: 29 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 73549
95 % 1 1 51311
90 % 1 1 48703
70 % 1 1 42713
50 % 1 1 36467
40 % 1 1 32157
30 % 1 1 27269

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.