Sequence Similarity Clusters for the Entities in PDB 1CN3

Entity #1 | Chains: A,B,C,D,E
COAT PROTEIN VP1 protein, length: 283 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 4400
95 % 9 9 1248 Flexibility: No
Max RMSD: 0.8, Avg RMSD: 0.3
PDBFlex
90 % 9 9 1267
70 % 9 9 1287
50 % 44 46 138
40 % 44 46 153
30 % 46 50 154
Entity #2 | Chains: F
FRAGMENT OF COAT PROTEIN VP2 protein, length: 29 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 60135
95 % 1 1 49096
90 % 1 1 46602
70 % 1 1 40848
50 % 1 1 34664
40 % 1 1 30369
30 % 1 1 25362

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures