Sequence Similarity Clusters for the Entities in PDB 1CMY

Entity #1 | Chains: A,C
HEMOGLOBIN YPSILANTI (CARBONMONOXY) (ALPHA CHAIN) protein, length: 141 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 209 222 22
95 % 236 250 19 Flexibility: Low
Max RMSD: 3.8, Avg RMSD: 0.7
PDBFlex
90 % 237 251 20
70 % 312 332 14
50 % 713 754 4
40 % 718 759 8
30 % 1161 1214 8
Entity #2 | Chains: B,D
HEMOGLOBIN YPSILANTI (CARBONMONOXY) (BETA CHAIN) protein, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 44882
95 % 237 250 18 Flexibility: Low
Max RMSD: 1.5, Avg RMSD: 0.6
PDBFlex
90 % 242 255 19
70 % 326 346 11
50 % 714 754 4
40 % 719 759 8
30 % 1162 1214 8

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures