Sequence Similarity Clusters for the Entities in PDB 1CMY

Entity #1 | Chains: A,C
HEMOGLOBIN YPSILANTI (CARBONMONOXY) (ALPHA CHAIN) protein, length: 141 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 209 222 22
95 % 236 250 20 Flexibility: Low
Max RMSD: 3.8, Avg RMSD: 0.7
PDBFlex
90 % 237 251 21
70 % 312 332 16
50 % 713 754 4
40 % 718 759 8
30 % 1173 1226 8
Entity #2 | Chains: B,D
HEMOGLOBIN YPSILANTI (CARBONMONOXY) (BETA CHAIN) protein, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 45747
95 % 237 250 19 Flexibility: Low
Max RMSD: 1.5, Avg RMSD: 0.6
PDBFlex
90 % 242 255 19
70 % 326 346 14
50 % 714 754 4
40 % 719 759 8
30 % 1174 1226 8

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures