Sequence Similarity Clusters for the Entities in PDB 1CMY

Entity #1 | Chains: A,C
HEMOGLOBIN YPSILANTI (CARBONMONOXY) (ALPHA CHAIN) protein, length: 141 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 239 254 12
95 % 249 265 16 Flexibility: Low
Max RMSD: 4.4, Avg RMSD: 0.7
PDBFlex
90 % 249 265 18
70 % 312 332 17
50 % 714 755 4
40 % 719 760 7
30 % 1232 1299 6
Entity #2 | Chains: B,D
HEMOGLOBIN YPSILANTI (CARBONMONOXY) (BETA CHAIN) protein, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 41844
95 % 238 251 19 Flexibility: Low
Max RMSD: 1.7, Avg RMSD: 0.7
PDBFlex
90 % 243 256 21
70 % 327 347 14
50 % 715 755 4
40 % 720 760 7
30 % 1233 1299 6

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures