Sequence Similarity Clusters for the Entities in PDB 1CMK

Entity #1 | Chains: E
cAMP-DEPENDENT PROTEIN KINASE CATALYTIC SUBUNIT protein, length: 350 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 27027
95 % 228 240 127 Flexibility: Low
Max RMSD: 4.8, Avg RMSD: 0.9
PDBFlex
90 % 228 241 130
70 % 228 241 149
50 % 228 241 177
40 % 228 241 189
30 % 3791 4073 2
Entity #2 | Chains: I
cAMP-dependent protein kinase inhibitor, alpha form protein, length: 22 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 125 127 198
95 % 125 127 264 Flexibility: Low
Max RMSD: 3.7, Avg RMSD: 0.7
PDBFlex
90 % 151 153 238
70 % 151 153 270
50 % 151 153 290
40 % 151 153 312
30 % 151 153 318

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures