Sequence Similarity Clusters for the Entities in PDB 1CMA

Entity #1 | Chains: C
DNA (5'-D(*TP*TP*AP*GP*AP*CP*GP*TP*CP*T)-3') dna, length: 10 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: D
DNA (5'-D(*AP*GP*AP*CP*GP*TP*CP*TP*A)-3') dna, length: 9 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: A,B
PROTEIN (MET REPRESSOR) protein, length: 104 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 14005
95 % 9 10 1933 Flexibility: Low
Max RMSD: 2.8, Avg RMSD: 1.5
PDBFlex
90 % 9 10 1979
70 % 9 10 2003
50 % 9 10 2015
40 % 9 10 2008
30 % 9 10 1933

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures