Sequence Similarity Clusters for the Entities in PDB 1CMA

Entity #1 | Chains: C
DNA (5'-D(*TP*TP*AP*GP*AP*CP*GP*TP*CP*T)-3') dna, length: 10 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: D
DNA (5'-D(*AP*GP*AP*CP*GP*TP*CP*TP*A)-3') dna, length: 9 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: A,B
PROTEIN (MET REPRESSOR) protein, length: 104 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 13601
95 % 9 10 1881 Flexibility: Low
Max RMSD: 2.8, Avg RMSD: 1.4
PDBFlex
90 % 9 10 1928
70 % 9 10 1947
50 % 9 10 1955
40 % 9 10 1950
30 % 9 10 1880

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.