Sequence Similarity Clusters for the Entities in PDB 1CLY

Entity #1 | Chains: L
IGG FAB (HUMAN IGG1, KAPPA) protein, length: 219 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 45499
95 % 17 18 2158 Flexibility: Low
Max RMSD: 4.8, Avg RMSD: 1.9
PDBFlex
90 % 469 762 2
70 % 1545 2519 1
50 % 3142 5107 1
40 % 3576 5756 1
30 % 4428 7175 1
Entity #2 | Chains: H
IGG FAB (HUMAN IGG1, KAPPA) protein, length: 219 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 45497
95 % 2 2 37903 Flexibility: Low
Max RMSD: 0.8, Avg RMSD: 0.8
PDBFlex
90 % 2 2 36157
70 % 1519 2478 2
50 % 3143 5107 1
40 % 3577 5756 1
30 % 4429 7175 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures