Sequence Similarity Clusters for the Entities in PDB 1CLY

Entity #1 | Chains: L
IGG FAB (HUMAN IGG1, KAPPA) protein, length: 219 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 40534
95 % 16 17 2271 Flexibility: Low
Max RMSD: 4.8, Avg RMSD: 1.9
PDBFlex
90 % 444 729 3
70 % 1451 2362 1
50 % 2946 4781 1
40 % 2946 4781 1
30 % 3419 5635 1
Entity #2 | Chains: H
IGG FAB (HUMAN IGG1, KAPPA) protein, length: 219 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 40533
95 % 2 2 31027 Flexibility: Low
Max RMSD: 0.8, Avg RMSD: 0.8
PDBFlex
90 % 2 2 29823
70 % 1421 2311 2
50 % 2947 4781 1
40 % 2947 4781 1
30 % 3420 5635 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures