Sequence Similarity Clusters for the Entities in PDB 1CLY

Entity #1 | Chains: L
IGG FAB (HUMAN IGG1, KAPPA) protein, length: 219 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 39974
95 % 16 17 2235 Flexibility: Low
Max RMSD: 4.8, Avg RMSD: 1.9
PDBFlex
90 % 424 701 3
70 % 1396 2287 1
50 % 2838 4633 1
40 % 2838 4633 1
30 % 3295 5460 1
Entity #2 | Chains: H
IGG FAB (HUMAN IGG1, KAPPA) protein, length: 219 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 39973
95 % 2 2 30608 Flexibility: Low
Max RMSD: 0.8, Avg RMSD: 0.8
PDBFlex
90 % 2 2 29426
70 % 1373 2244 2
50 % 2839 4633 1
40 % 2839 4633 1
30 % 3296 5460 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.