Sequence Similarity Clusters for the Entities in PDB 1CLQ

Entity #1 | Chains: E
DNA (5'-D(*GP*CP*GP*GP*AP*AP*CP*TP*AP*CP*T)-3') dna, length: 11 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: D
DNA (5'-D(*AP*GP*TP*AP*GP*TP*TP*CP*CP*GP*CP*G)-3') dna, length: 12 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: A
PROTEIN (DNA POLYMERASE) protein, length: 903 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 27 40 458
95 % 105 120 236
90 % 105 120 243
70 % 105 120 273
50 % 105 120 303
40 % 105 120 334
30 % 105 120 341

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures