Sequence Similarity Clusters for the Entities in PDB 1CKQ

Entity #1 | Chains: B
DNA (5'-D(*TP*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)-3') dna, length: 13 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: A
PROTEIN (ENDONUCLEASE) protein, length: 276 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 5 9745
95 % 3 8 6505
90 % 3 8 6494
70 % 3 8 6327
50 % 3 8 5894
40 % 3 8 5514
30 % 3 8 4943

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.