Sequence Similarity Clusters for the Entities in PDB 1CKL

Entity #1 | Chains: A,B,C,D,E,F
PROTEIN (CD46) protein, length: 126 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 4 2663
95 % 4 4 2987 Flexibility: Low
Max RMSD: 5.4, Avg RMSD: 2.5
PDBFlex
90 % 4 4 3040
70 % 4 4 2993
50 % 4 4 2949
40 % 4 4 2878
30 % 36 58 543

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures