Sequence Similarity Clusters for the Entities in PDB 1CKB

Entity #1 | Chains: A
C-CRK N-TERMINAL SH3 DOMAIN protein, length: 57 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 6 10 6731
95 % 6 10 6865 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.4
PDBFlex
90 % 6 10 6838
70 % 6 10 6635
50 % 6 10 6170
40 % 112 325 112
30 % 153 478 44
Entity #2 | Chains: B
SOS PEPTIDE (PRO-PRO-PRO-VAL-PRO-PRO-ARG-ARG-ARG-ARG) protein, length: 10 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures