Sequence Similarity Clusters for the Entities in PDB 1CK0

Entity #1 | Chains: L
PROTEIN (IGG1-KAPPA ANTIBODY 131 (LIGHT CHAIN)) protein, length: 216 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 3 25017
95 % 31 58 458 Flexibility: Low
Max RMSD: 5.5, Avg RMSD: 1.7
PDBFlex
90 % 47 91 269
70 % 1179 2516 1
50 % 2408 5101 1
40 % 2757 5750 1
30 % 3357 7168 1
Entity #2 | Chains: H
PROTEIN (IGG1-KAPPA ANTIBODY 131 (HEAVY CHAIN)) protein, length: 219 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 3 25064
95 % 2 3 22145 Flexibility: No
Max RMSD: 0.2, Avg RMSD: 0.2
PDBFlex
90 % 2 3 21464
70 % 1169 2475 2
50 % 2409 5101 1
40 % 2758 5750 1
30 % 3358 7168 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures