Sequence Similarity Clusters for the Entities in PDB 1CK0

Entity #1 | Chains: L
PROTEIN (IGG1-KAPPA ANTIBODY 131 (LIGHT CHAIN)) protein, length: 216 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 3 27036
95 % 37 62 379 Flexibility: Low
Max RMSD: 5.6, Avg RMSD: 1.7
PDBFlex
90 % 45 83 296
70 % 1049 2264 1
50 % 2144 4587 1
40 % 2144 4587 1
30 % 2424 5392 1
Entity #2 | Chains: H
PROTEIN (IGG1-KAPPA ANTIBODY 131 (HEAVY CHAIN)) protein, length: 219 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 3 26938
95 % 2 3 22460 Flexibility: No
Max RMSD: 0.2, Avg RMSD: 0.2
PDBFlex
90 % 2 3 21778
70 % 1041 2222 2
50 % 2145 4587 1
40 % 2145 4587 1
30 % 2425 5392 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.