Sequence Similarity Clusters for the Entities in PDB 1CK0

Entity #1 | Chains: L
PROTEIN (IGG1-KAPPA ANTIBODY 131 (LIGHT CHAIN)) protein, length: 216 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 3 27847
95 % 37 62 429 Flexibility: Low
Max RMSD: 5.5, Avg RMSD: 1.7
PDBFlex
90 % 45 83 311
70 % 1104 2362 1
50 % 2254 4781 1
40 % 2254 4781 1
30 % 2549 5635 1
Entity #2 | Chains: H
PROTEIN (IGG1-KAPPA ANTIBODY 131 (HEAVY CHAIN)) protein, length: 219 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 3 27747
95 % 2 3 23159 Flexibility: No
Max RMSD: 0.2, Avg RMSD: 0.2
PDBFlex
90 % 2 3 22436
70 % 1091 2311 2
50 % 2255 4781 1
40 % 2255 4781 1
30 % 2550 5635 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures