Sequence Similarity Clusters for the Entities in PDB 1CK0

Entity #1 | Chains: L
PROTEIN (IGG1-KAPPA ANTIBODY 131 (LIGHT CHAIN)) protein, length: 216 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 3 27522
95 % 37 62 383 Flexibility: Low
Max RMSD: 5.6, Avg RMSD: 1.8
PDBFlex
90 % 45 83 301
70 % 1060 2287 1
50 % 2166 4633 1
40 % 2166 4633 1
30 % 2455 5461 1
Entity #2 | Chains: H
PROTEIN (IGG1-KAPPA ANTIBODY 131 (HEAVY CHAIN)) protein, length: 219 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 3 27422
95 % 2 3 22891 Flexibility: Low
Max RMSD: 0.5, Avg RMSD: 0.5
PDBFlex
90 % 2 3 22187
70 % 1052 2244 2
50 % 2167 4633 1
40 % 2167 4633 1
30 % 2456 5461 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.